1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 67, Issue 11

sp. nov., isolated from the seaweed, Free

Abstract

A Gram-stain-negative, gliding and rod shaped bacterium, designated strain ZO2-23 was isolated from a seaweed sample collected from the West Sea, Republic of Korea. Cells are catalase-negative and oxidase-positive. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain ZO2-23 forms an independent lineage within the genus . Strain ZO2-23 was related to SC2 (98.0 %, 16S rRNA gene sequence similarity) and IMCC3317 (97.9 %). The major fatty acids of strain ZO2-23 were iso-C, iso-C 3-OH, summed feature 3 and iso-C 3-OH. The only isoprenoid quinone of the isolate was menaquinone-6. The DNA G+C content of strain ZO2-23 was 31.7 mol%. Phenotypic characteristics distinguished strain ZO2-23 from the related species of the genus . On the basis of the evidences presented in this study, novel species, sp. nov., is proposed for strain ZO2-23 (=KCTC 52268=JCM 31799).

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): Flavobacteriaceae , Kordia zosterae sp. nov. and Zostera marina
© 2017 IUMS
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002379
2017-11-01
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/11/4790.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002379&mimeType=html&fmt=ahah

References

  1. Bernardet JF. Family I. Flavobacteriaceae Reichenbach 1992. In Krieg NR, Ludwig W, Whitman WB, Hedlund BP, Paster BJ et al. (editors) Bergey’s Manual of Systematic Bacteriology, 2nd ed. vol.4 New York: Springer; 2011 pp. 106–111
     [Google Scholar]
  2. Choi A, Oh HM, Yang SJ, Cho JC. Kordia periserrulae sp. nov., isolated from a marine polychaete Periserrula leucophryna, and emended description of the genus Kordia . Int J Syst Evol Microbiol 2011; 61:864–869 [View Article][PubMed]
     [Google Scholar]
  3. Sohn JH, Lee JH, Yi H, Chun J, Bae KS et al. Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide. Int J Syst Evol Microbiol 2004; 54:675–680 [View Article][PubMed]
     [Google Scholar]
  4. Hameed A, Shahina M, Lin SY, Cho JC, Lai WA et al. Kordia aquimaris sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia . Int J Syst Evol Microbiol 2013; 63:4790–4796 [View Article][PubMed]
     [Google Scholar]
  5. Park S, Jung YT, Yoon JH. Kordia jejudonensis sp. nov., isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Kordia . Int J Syst Evol Microbiol 2014; 64:657–662 [View Article][PubMed]
     [Google Scholar]
  6. Baek K, Choi A, Kang I, Lee K, Cho JC. Kordia antarctica sp. nov., isolated from Antarctic seawater. Int J Syst Evol Microbiol 2013; 63:3617–3622 [View Article][PubMed]
     [Google Scholar]
  7. Du J, Liu Y, Lai Q, Dong C, Xie Y et al. Kordia zhangzhouensis sp. nov., isolated from the surface freshwater of the Jiulong River in China. Int J Syst Evol Micribiol 2015; 65:3379–3383 [Crossref]
     [Google Scholar]
  8. Chun J, Goodfellow M. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 1995; 45:240–245 [View Article][PubMed]
     [Google Scholar]
  9. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
     [Google Scholar]
  10. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article][PubMed]
     [Google Scholar]
  11. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999; 41:95–98
     [Google Scholar]
  12. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
     [Google Scholar]
  13. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
     [Google Scholar]
  14. Felsenstein J. PHYLIP (Phylogeny Inference Package), Version 3.5c Department of Genetics, University of Washington, Seattle, USA 1993
     [Google Scholar]
  15. Rzhetsky A, Nei M. Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. J Mol Evol 1992; 35:367–375 [View Article][PubMed]
     [Google Scholar]
  16. Jukes TH, Cantor CR. Evolution of protein molecules. In Munro HN. (editor) Mammalian Protein Metabolism New York: Academic Press; 1969 pp. 21–132 [Crossref]
     [Google Scholar]
  17. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article][PubMed]
     [Google Scholar]
  18. Marmur J, Doty P. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 1962; 5:109–118 [View Article][PubMed]
     [Google Scholar]
  19. Lee JS, Lee KC, Pyun YR, Bae KS. Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil. Int J Syst Evol Microbiol 2003; 53:1277–1280 [View Article][PubMed]
     [Google Scholar]
  20. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [Crossref]
     [Google Scholar]
  21. Zobell CE. Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 1941; 4:42–75
     [Google Scholar]
  22. Powers EM. Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 1995; 61:3756–3758[PubMed]
     [Google Scholar]
  23. Yamaguchi S, Yokoe M. A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl Environ Microbiol 2000; 66:3337–3343 [View Article][PubMed]
     [Google Scholar]
  24. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
     [Google Scholar]
  25. Tindall BJ, Sikorski J, Smibert RA, Krieg NR. Phenotypic characterization and the principles of comparative systematics. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM et al. (editors) Methods for General and Molecular Microbiology Washington, DC: American Society for Microbiology Press; 2007 pp. 335–386
     [Google Scholar]
  26. Barrow GI, Feltham RKA. Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd ed. Cambridge: Cambridge University Press; 1993 [Crossref]
     [Google Scholar]
  27. Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070 [View Article][PubMed]
     [Google Scholar]
  28. Klassen JL, Foght JM. Differences in carotenoid composition among hymenobacter and related strains support a tree-like model of carotenoid evolution. Appl Environ Microbiol 2008; 74:2016–2022 [View Article][PubMed]
     [Google Scholar]
  29. Bauer AW, Kirby WMM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am J ClinPathol 1966; 45:493–496
     [Google Scholar]
  30. CLSI Performance Standards for Antimicrobial Susceptibility Testing. 19th Informational Supplement CLSI document M100-S19 (ISBN 1–56238–690–5) Wayne, PA: Clinical and Laboratory Standards Institute; 2009
     [Google Scholar]
  31. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
     [Google Scholar]
  32. Komagata K, Suzuki K. Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 1988; 19:161–207 [Crossref]
     [Google Scholar]
  33. Schenkel E, Berlaimont V, Dubois J, Helson-Cambier M, Hanocq M. Improved high-performance liquid chromatographic method for the determination of polyamines as their benzoylated derivatives: application to P388 cancer cells. J Chromatogr B Biomed Appl 1995; 668:189–197 [View Article][PubMed]
     [Google Scholar]
  34. Collins MD. Isoprenoid quinones. In Goodfellow M, O’Donnell AG. (editors) Chemical Methods in Prokaryotic Systematics Chichester: John Wiley & Sons Ltd; 1994 pp. 265–309
     [Google Scholar]
  35. Qi F, Huang Z, Lai Q, Li D, Shao Z. Kordia ulvae sp. nov., a bacterium isolated from the surface of green marine algae Ulva sp. Int J Syst Evol Microbiol 2016; 66:2623–2628 [View Article][PubMed]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002379
Loading
Kordia zosterae sp. nov., isolated from the seaweed, Zostera marina
Int J Syst Evol Microbiol 67, 4790 (2017); https://doi.org/10.1099/ijsem.0.002379
/content/journal/ijsem/10.1099/ijsem.0.002379
/content/journal/ijsem/10.1099/ijsem.0.002379
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error