1887

Abstract

The taxonomic relationship between several isolates from the Baltic and reference strains of this species is presented in this study. Results from DNA-DNA hybridization using a newly developed nonradioactive detection system and from 165 rRNA gene sequencing demonstrated that is a species containing more than a single genomic group. The genomic group II was phylogenetically, genotypically and phenotypically distant enough from the species type strain to be classified as a single species within the genus . Therefore, we propose to reclassify Owen’s genomic group II as sp. nov. with the type strain NCTC 10735.

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1998-01-01
2024-04-23
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References

  1. Brenner D. J., Fanning G. R., Rake A. V., Johnson K. E. 1969; Batch procedure for thermal elution of DNA from hydroxy apatite. Anal Biochem 28:447–459
    [Google Scholar]
  2. Brettar I., Hdfle M. G. 1993; Nitrous oxide producing heterotrophic bacteria from the water column of the central Baltic, abundance and molecular identification. Mar Ecol Prog Ser 94:253–265
    [Google Scholar]
  3. Brosius J., Dull T. L., Sleeter D. D., Noller H. F. 1981; Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148:107–127
    [Google Scholar]
  4. Caccavo J. R., Blakemore R. P., Lovely D. R. 1992; A hydrogen-oxidizing, Fe(III)-reducing microorganism from the Great Bay Estuary, New Hampshire. Appl Environ Microbiol 58:3211–3216
    [Google Scholar]
  5. Cerdà-Cuéllar M., Rosselld-Mora R., Lalucat J., Jofre J., Blanch A. 1997; Vibrio scophthalmi sp. nov., a new species from turbot Scophthalmus maximus. Int J Syst Bacteriol 47:58–61
    [Google Scholar]
  6. Debois J., Degreef H., Vandepitte J., Spaepen J. 1975; Pseudomonas putrefaciens as a cause of infection in humans. J Clin Pathol 28:993–996
    [Google Scholar]
  7. Derby H. A., Hammer B. W. 1931; Bacteriology of butter. IV. Bacteriological studies of surface taint butter. Iowa Agric Exp Stn Res Bull 145:387–416
    [Google Scholar]
  8. DiChristina T. J., DeLong E. F. 1993; Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens. Appl Environ Microbiol 59:4152–4160
    [Google Scholar]
  9. Dominguez H., Fonnesbech Vogel B., Gram L., Hoffmann S., Schaebel S. 1996; Shewanella alga bacteremia in two patients with lower leg ulcers. Clin Infect Dis 22:1036–1039
    [Google Scholar]
  10. Edwards U., Rogall T., BlScker H., Emde M., Btittger E. C. 1989; Isolation and direct nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843–7853
    [Google Scholar]
  11. Felsenstein J. 1982; Numerical methods for inferring phylogenetic trees. Q Rev Biol 57:379–404
    [Google Scholar]
  12. Fonnesbech Vogel B., Jorgensen K., Christensen H., Olsen J. E., Gram L. 1997; Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis. Appl Environ Microbiol 63:2189–2199
    [Google Scholar]
  13. HSfle M. G., Brettar I. 1996; Genotyping of heterotrophic bacteria from the central Baltic Sea using low-molecular- weight RNA profiles. Appl Environ Microbiol 62:1382–1390
    [Google Scholar]
  14. Holmes B., Lapage S. B., Malnick H. 1975; Strains of Pseudomonas putrefaciens from clinical material. J Clin Pathol 28:149–155
    [Google Scholar]
  15. Hutson R. A., Thompson D. E., Collins M. D. 1993; Genetic interrelationships of saccharolytic Clostridium botulinum types B, E and F and related clostridia as revealed by small-subunit rRNA gene sequences. FEMS Microbiol Lett 108:103–110
    [Google Scholar]
  16. lizuka H., Komagata K. 1964; Microbiological studies on petroleum and natural gas. II. Determination of pseudomonads isolated from oilbrines and related materials. J Gen Appl Microbiol 10:223–231
    [Google Scholar]
  17. Jorgensen B. R., Huss H. H. 1989; Growth and activity of Shewanella putrefaciens isolated from spoiling fish. Int J Food Microbiol 9:51–62
    [Google Scholar]
  18. Karlson U., Dwyer D. F., Hooper S. W., Moore E. R. B., Timmis K. N., Eltis L. D. 1993; Two independently regulated cytochromes P-450 in Rhodococcus rhodochrous strain that degrades 2-ethoxyphenol and 4-methoxy- benzoate. J Bacteriol 175:1467–1474
    [Google Scholar]
  19. Kim J. H., Cooper R. A., Welty-Wolff K. E., Harrell L. J., Zwadyk P., Klotman M. E. 1989; Pseudomonas putrefaciens bacteremia. Rev Infect Dis 11:97–104
    [Google Scholar]
  20. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp. 115–175 Edited by Stackebrandt E., Goodfellow M. Chichester: John Wiley;
    [Google Scholar]
  21. Lee J. V., Gibson D. M., Shewan J. M. 1977; A numerical taxonomy study of some Pseudomonas-like marine bacteria. J Gen Microbiol 98:439–451
    [Google Scholar]
  22. Lind E., Ursing J. 1986; Clinical strains of Enterobacter agglomerans (synonyms, Erwinia herbicola, Erwinia milletiae) identified by DNA-DNA-hybridization. Acta Pathol Microbiol Immunol Scand Sect B 94:205–213
    [Google Scholar]
  23. MacDonell M. T., Colwell R. R. 1985; Phylogeny of the Vibrionaceae and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6:171–182
    [Google Scholar]
  24. Maidak B. L., Olsen G., Larsen N., Overbeek R., MacCaughey M. J., Woese C. R. 1996; The Ribosomal Database Project. Nucleic Acids Res 24:82–85
    [Google Scholar]
  25. Marmur J. 1961; A procedure for the isolation of DNA from microorganisms. J Mol Biol 3:208–218
    [Google Scholar]
  26. Nealson K. H., Saffarini D. 1994; Iron and manganese in anaerobic respiration, environmental significance, physiology, and regulation. Annu Rev Microbiol 48:311–343
    [Google Scholar]
  27. Nozue H., Hayashi T., Hashimoto Y., Ezaki T., Hamasaki K., Ohwada K., Terawaki Y. 1992; Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al., 1990, 335. Int J Syst Bacteriol 42:628–634
    [Google Scholar]
  28. Owen R. J., Legros R. M., Lapage S. P. 1978; Base composition, size and sequence similarities of genome deoxyribonucleic acids from clinical isolates of Pseudomonas putrefaciens. J Gen Microbiol 104:127–138
    [Google Scholar]
  29. Perry K. A., Kostka J. E., Luther G. W., Ill Nealson K. H. 1993; Mediation of sulfur speciation by a Black Sea facultative anaerobe. Science 259:801–803
    [Google Scholar]
  30. Rosselld-Mora R. A., Cavacco F. Jr, Osterlehner K., Springer N., Spring S., Schuler D., Ludwig W., Amann R., Vanncanneyt M., Schleifer K. H. 1994; Isolation and taxonomic characterization of a halotolerant facultatively iron-reducing bacterium. Syst Appl Microbiol 17:569–573
    [Google Scholar]
  31. Rosselld-Mora R. A., Ludwig W., KSmpfer P., Amann R., Schleifer K. H. 1995; Ferrimonas balearica gen. nov., spec, nov., a new marine facultative Fe(III)-reducing bacterium. Syst Appl Microbiol 18:196–202
    [Google Scholar]
  32. Ruger H.-J., Krambeck H.-J. 1994; Evaluation of the BIOLOG substrate metabolism system for classification of marine bacteria. Syst Appl Microbiol 17:281–288
    [Google Scholar]
  33. Semple K. M., Westlake D. W. S. 1987; Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 33:366–371
    [Google Scholar]
  34. Shewan J. M. 1977; The bacteriology of fresh and spoiling fish and the biochemical changes induced by bacterial action. In Proceedings of the Conference on Handling, Processing and Marketing of Tropical Fish pp. 51–66 London: Tropical Products Institute;
    [Google Scholar]
  35. Shewan J. M., Hobbs G., Hodgkiss W. 1960; A determinative scheme for the identification of certain genera of Gram-negative bacteria with special reference to Pseudo- monadaceae. J Appl Bacteriol 23:379–390
    [Google Scholar]
  36. Simidu U., Kita-Tsukamoto K., Yasumoto T., Yotsu M. 1990; Taxonomy of four marine bacterial strains that produce tetrodotoxin. Int J Syst Bacteriol 40:331–336
    [Google Scholar]
  37. Stenstrdm I. M., Molin G. 1990; Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens. J Appl Bacteriol 68:601–618
    [Google Scholar]
  38. Strunk O., Gross O., Reichel B. 11 other authors arb, a software environment for sequence data (submitted for publication)
  39. Tijssen P. 1985; Practice and theory of enzyme immunoassays. In Laboratory Techniques in Biochemistry and Molecular Biology vol. 15 Edited by Burdon R. H., van Knippenberg P. H. Amsterdam: Elsevier;
    [Google Scholar]
  40. Vaneechoutte M., Rossau R., de Vos P., Gillis M., Janssens D., Paepe N., de Rouck A., Fiers T., Claeys G., Kersters K. 1992; Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restric-tion analysis (ARDRA). FEMS Microbiol Lett 93:227–234
    [Google Scholar]
  41. Van Landschoot A., de Ley J. 1983; Intra- and intergeneric similarities of the rRNA cistrons of Alteromonas, Marinomonas (gen. nov.) and some other Gram-negative bacteria. J Gen Microbiol 129:3057–3074
    [Google Scholar]
  42. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; International Committee on Systematic Bacteriology. Report of the Ad Hoc Committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464
    [Google Scholar]
  43. Ziemke F., Brettar I., Httfle M. G. 1997; Stability and diversity of the genetic structure of a Shewanella putrefaciens population in the water column of the central Baltic. Aquat Microb Ecol 13:63–74
    [Google Scholar]
  44. Ziemke F., H&fle M. G. Unpublished data
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