1887

Abstract

A Gram-positive actinobacterium, designated strain YIM 90716, was isolated from a saline soil sample collected from Ganjiahu Suosuo Forest National Nature Reserve in Xinjiang Province, north-west China. The new isolate contained lysine, glutamic acid and alanine with peptidoglycan type Lys–Ala (variation A3). The major phospholipids were phosphatidylglycerol and diphosphatidylglycerol. The predominant menaqinone was MK-7(H). The major fatty acids were anteiso-C, iso-C and anteiso-C. The DNA G+C content of strain YIM 90716 was 68.0 mol%. Chemotaxonomic properties supported the affiliation of strain YIM 90716 to the genus . Phylogenetic analysis based on 16S rRNA gene sequences revealed that the organism was related most closely to DSM 20032 (96.8 % similarity) and showed lower levels of 16S rRNA gene similarity (<96.5 %) with the type strains of other species of the genus . The results of fatty acid analysis and physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain YIM 90716 from its closest relatives. On the basis of data from the present polyphasic study, strain YIM 90716 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is YIM 90716 (=DSM 18442=KCTC 19172=CCTCC AB 206069).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.006627-0
2009-06-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/59/6/1316.html?itemId=/content/journal/ijsem/10.1099/ijs.0.006627-0&mimeType=html&fmt=ahah

References

  1. Carrasco, I. J., Márquez, M. C., Yanfen, X., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A.(2006).Gracilibacillus orientalis sp. nov., a novel moderately halophilic bacterium isolated from a salt lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 599–604.[CrossRef] [Google Scholar]
  2. Cerny, G.(1978). Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. Appl Microbiol Biotechnol 5, 113–122.[CrossRef] [Google Scholar]
  3. Cowan, S. T. & Steel, K. J.(1965).Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
  4. DSMZ(2001).Catalogue of Strains, 7th edn. Braunschweig: Deutsche Sammlung von Mikroorganismen und Zellkulturen. http://www.dsmz.de/index.html.
  5. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  6. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  7. Fitch, W. M.(1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.[CrossRef] [Google Scholar]
  8. Hasegawa, T., Takizaea, M. & Tanida, S.(1983). A rapid analysis for chemical grouping aerobic actinomycetes. J Gen Appl Microbiol 29, 319–322.[CrossRef] [Google Scholar]
  9. Kim, S. B., Nedashkovskaya, O. I., Mikhailov, V. V., Han, S. K., Kim, K. O., Rhee, M. S. & Bae, K. S.(2004).Kocuria marina sp. nov., a novel actinobacterium isolated from marine sediment. Int J Syst Evol Microbiol 54, 1617–1620.[CrossRef] [Google Scholar]
  10. Kimura, M.(1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16, 111–120.[CrossRef] [Google Scholar]
  11. Kloos, W. E., Tornabene, T. G. & Schleifer, K. H.(1974). Isolation and characterization of micrococci from human skin, including two new species: Micrococcus lylae and Micrococcus kristinae. Int J Syst Bacteriol 24, 79–101.[CrossRef] [Google Scholar]
  12. Kovács, G., Burghardt, J., Pradella, S., Schumann, P., Stackebrandt, E. & Marialigeti, K.(1999).Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia). Int J Syst Bacteriol 49, 167–173.[CrossRef] [Google Scholar]
  13. Kroppenstedt, R. M.(1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359–2367.[CrossRef] [Google Scholar]
  14. Leifson, E.(1960).Atlas of Bacterial Flagellation. London: Academic Press.
  15. Li, W. J., Zhang, Y. Q., Schumann, P., Chen, H. H., Hozzein, W. N., Tian, X. P., Xu, L. H. & Jiang, C. L.(2006).Kocuria aegyptia sp. nov., a novel actinobacterium isolated from a saline, alkaline desert soil in Egypt. Int J Syst Evol Microbiol 56, 733–737.[CrossRef] [Google Scholar]
  16. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L.(2007).Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424–1428.[CrossRef] [Google Scholar]
  17. Marmur, J.(1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef] [Google Scholar]
  18. Mayilraj, S., Kroppenstedt, R. M., Suresh, K. & Saini, H. S.(2006).Kocuria himachalensis sp. nov., an actinobacterium isolated from the India Himalayas. Int J Syst Evol Microbiol 56, 1971–1975.[CrossRef] [Google Scholar]
  19. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  20. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H.(1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.[CrossRef] [Google Scholar]
  21. Reddy, G. S. N., Prakash, J. S. S., Prabahar, V., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S.(2003).Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 53, 183–187.[CrossRef] [Google Scholar]
  22. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  23. Sasser, M.(1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16 [Google Scholar]
  24. Schleifer, K. H. & Kandler, O.(1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407–477. [Google Scholar]
  25. Stackebrandt, E., Koch, C., Gvozdiak, O. & Schumann, P.(1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45, 682–692.[CrossRef] [Google Scholar]
  26. Tamura, K., Dudley, J., Nei, M. & Kumar, S.(2007).mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24, 1596–1599.[CrossRef] [Google Scholar]
  27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  28. Tvrzová, L., Schumann, P., Sedláček, I., Páčová, Z., Spröer, C., Verbarg, S. & Kroppenstedt, R. M.(2005). Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp. nov. Int J Syst Evol Microbiol 55, 139–142.[CrossRef] [Google Scholar]
  29. Zhou, G. L., Luo, X. S., Tang, Y., Zhang, L., Yang, Q., Qiu, Y. J. & Fang, C. X.(2008).Kocuria flava sp. nov. and Kocuria turfanensis sp. nov., airborne actinobacteria isolated from Xinjiang, China. Int J Syst Evol Microbiol 58, 1304–1307.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.006627-0
Loading
/content/journal/ijsem/10.1099/ijs.0.006627-0
Loading

Data & Media loading...

Supplements

Chromatograms of amino acids in purified cell-wall and whole-cell hydrolysates of strain YIM 90716 ( sp. nov.). [PDF](22 KB)

PDF

Cellular fatty acid compositions of strain YIM 90716 ( sp. nov.) and . [PDF](44 KB)

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error