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Abstract

A novel Gram-positive, aerobic, spore-forming, endophytic actinomycete, designated strain YIM 61359, was isolated from the roots of plants collected from tropical rainforest in Xishuangbanna, Yunnan Province, south-west China. The strain formed single or cluster spores with smooth surfaces from substrate mycelia. The strain contained -diaminopimelic acid in the cell wall and arabinose, xylose, galactose and glucose in whole-cell hydrolysates. The acyl type of the cell-wall polysaccharides was glycolyl. MK-10(H), MK-10(H) and MK-10(H) were the predominant menaquinones. The polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and several unknown phospholipids. The major fatty acids were iso-C, anteiso-C, C, anteiso-C and iso-C. The DNA G+C content of strain YIM 61359 was 69.7 mol%. These chemotaxonomic data indicated that the strain belongs to the family . Phylogenetic analysis based on 16S rRNA gene sequences also suggested that strain YIM 61359 fell within the family . On the basis of morphological and chemotaxonomic data, phylogenetic analysis and characteristic patterns of 16S rRNA gene signature nucleotides, strain YIM 61359 is considered to represent a novel species of a new genus within the family , for which the name gen. nov., sp. nov. is proposed. The type strain of is YIM 61359 (=CCTCC AA 208022=DSM 45238).

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2009-10-01
2024-04-19
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References

  1. Ara, I. & Kudo, T.(2006). Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov. Int J Syst Evol Microbiol 56, 393–400.[CrossRef] [Google Scholar]
  2. Ara, I. & Kudo, T.(2007a).Luedemannella gen. nov., a new genus of the family Micromonosporaceae and description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J Gen Appl Microbiol 53, 39–51.[CrossRef] [Google Scholar]
  3. Ara, I. & Kudo, T.(2007b).Krasilnikovia gen. nov., a new member of the family Micromonosporaceae and description of Krasilnikovia cinnamonea sp. nov. Actinomycetologica 21, 1–10.[CrossRef] [Google Scholar]
  4. Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Omura, S. & Takahashi, Y.(2008).Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 58, 1644–1652.[CrossRef] [Google Scholar]
  5. Asano, K. & Kawamoto, I.(1986).Catellatospora, a new genus of the Actinomycetales. Int J Syst Bacteriol 36, 512–517.[CrossRef] [Google Scholar]
  6. Collins, M. D. & Jones, D.(1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycan based on 2, 4-diaminobutyric acid. J Appl Bacteriol 48, 459–470.[CrossRef] [Google Scholar]
  7. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E.(1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef] [Google Scholar]
  8. Couch, J. N.(1950).Actinoplanes. A new genus of the Actinomycetales. J Elisha Mitchell Sci Soc 66, 87–92. [Google Scholar]
  9. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  10. Goodfellow, M. L., Stanton, J., Simpson, K. E. & Minnikin, D. E.(1990). Numerical and chemical classification of Actinoplanes and some related actinomycetes. J Gen Microbiol 136, 19–36.[CrossRef] [Google Scholar]
  11. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N.(1974).Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54–63.[CrossRef] [Google Scholar]
  12. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K.(1997).Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129–1133.[CrossRef] [Google Scholar]
  13. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O.(2005). PHYML Online – a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33, W557–W559.[CrossRef] [Google Scholar]
  14. Hasegawa, T., Takizawa, M. & Tanida, S.(1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319–322.[CrossRef] [Google Scholar]
  15. Kämpfer, P. & Kroppenstedt, R. M.(1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989–1005.[CrossRef] [Google Scholar]
  16. Kane, W. D.(1966). A new genus of the Actinoplanaceae, Pilimelia, with a description of two species, Pilimelia terevasa and Pilimelia anulata. J Elisha Mitchell Sci Soc 82, 220–230. [Google Scholar]
  17. Kelly, K. L.(1964).Inter-Society Color Council – National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
  18. Koch, C., Kroppenstedt, R. M., Rainey, F. A. & Stackebrandt, E.(1996). 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae. Int J Syst Bacteriol 46, 765–768.[CrossRef] [Google Scholar]
  19. Krasil'nikov, N. A.(1938).Ray Fungi and Related OrganismsActinomycetales. Moscow: Izdatel'stvo Akademii Nauk SSSR (in Russian).
  20. Kroppenstedt, R. M.(1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173–199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
  21. Kudo, T., Nakajima, Y. & Suzuki, K.(1999).Catenuloplanes crispus (Petrolini et al. 1993) comb. nov.: incorporation of the genus Planopolyspora Petrolini 1993 into the genus Catenuloplanes Yokota et al. 1993 with an amended description of the genus Catenuloplanes. Int J Syst Bacteriol 49, 1853–1860.[CrossRef] [Google Scholar]
  22. Kumar, S., Tamura, K. & Nei, M.(2004).mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef] [Google Scholar]
  23. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A.(1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249–260.[CrossRef] [Google Scholar]
  24. Lee, S. D. & Hah, Y. C.(2002). Proposal to transfer Catellatospora ferrugineum and ‘Catellatospora ishikariense’ to Asanoa gen. nov. as Asanoa ferrugineum comb. nov. and Asanoa ishikariensis sp. nov., with the emended description of the genus Catellatospora. Int J Syst Evol Microbiol 52, 967–972.[CrossRef] [Google Scholar]
  25. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L.(2007).Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424–1428.[CrossRef] [Google Scholar]
  26. Maldonado, L. A., Fenical, W., Jensen, P. R., Kauffman, C. A., Mincer, T. J., Ward, A. C., Bull, A. T. & Goodfellow, M.(2005).Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55, 1759–1766.[CrossRef] [Google Scholar]
  27. Matsumoto, A., Takahashi, Y., Shinose, M., Seino, A., Iwai, Y. & Omura, S.(2003).Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol 53, 1553–1559.[CrossRef] [Google Scholar]
  28. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  29. Minnikin, D. E., Collins, M. D. & Goodfellow, M.(1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87–95.[CrossRef] [Google Scholar]
  30. Ørskov, J.(1923).Investigations into the Morphology of the Ray Fungi. Copenhagen: Levin and Munksgaard.
  31. Otoguro, M., Hayakawa, M., Yamazaki, T. & Iimura, Y.(2001). An integrated method for the enrichment and selective isolation of Actinokineospora spp. in soil and plant litter. J Appl Microbiol 91, 118–130.[CrossRef] [Google Scholar]
  32. Qin, S., Su, Y. Y., Zhang, Y. Q., Wang, H. B., Jiang, C. L., Xu, L. H. & Li, W. J.(2008a).Pseudonocardia ailaonensis sp. nov., isolated from soil in China. Int J Syst Evol Microbiol 58, 2086–2089.[CrossRef] [Google Scholar]
  33. Qin, S., Wang, H. B., Chen, H. H., Zhang, Y. Q., Jiang, C. L., Xu, L. H. & Li, W. J.(2008b).Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees. Int J Syst Evol Microbiol 58, 2525–2528.[CrossRef] [Google Scholar]
  34. Reider, P. J. & Roland, D. M.(1984). Maytansinoids. In The Alkaloids, pp. 71–156. Edited by A. Brossi. New York: Academic Press.
  35. Rheims, H., Schumann, P., Rohde, M. & Stackebrandt, E.(1998).Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae. Int J Syst Bacteriol 48, 1119–1127.[CrossRef] [Google Scholar]
  36. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  37. Sasser, M.(1990).Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  38. Shirling, E. B. & Gottlieb, D.(1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef] [Google Scholar]
  39. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L.(1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479–491.[CrossRef] [Google Scholar]
  40. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A.(1994). A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193–203.[CrossRef] [Google Scholar]
  41. Tamura, T., Hayakawa, M. & Hatano, K.(1997). A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. Int J Syst Bacteriol 47, 97–102.[CrossRef] [Google Scholar]
  42. Tamura, T., Hayakawa, M. & Hatano, K.(2001). A new genus of the order Actinomycetales, Virgisporangium gen. nov., with descriptions of Virgisporangium ochraceum sp. nov. and Virgisporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51, 1809–1816.[CrossRef] [Google Scholar]
  43. Tamura, T., Hatano, K. & Suzuki, K.(2006). A new genus of the family Micromonosporaceae, Polymorphospora gen. nov., with description of Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56, 1959–1964.[CrossRef] [Google Scholar]
  44. Thawai, C., Tanasupawat, S., Itoh, T. & Kudo, T.(2006).Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 56, 1789–1794.[CrossRef] [Google Scholar]
  45. Thiemann, J. E., Pagani, H. & Beretta, G.(1967). A new genus of the Actinoplanaceae: Dactylosporangium gen. nov. Arch Mikrobiol 58, 42–52.[CrossRef] [Google Scholar]
  46. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  47. Uchida, K. & Aida, K.(1984). An improved method for the glycolate test for simple identification of acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131–134.[CrossRef] [Google Scholar]
  48. Waksman, S. A.(1967).The Actinomycetes. A Summary of Current Knowledge. New York: Ronald Press.
  49. Wiese, J., Jiang, Y., Tang, S. K., Thiel, V., Schmaljohann, R., Xu, L. H., Jiang, C. L. & Imhoff, J. F.(2008). A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58, 1324–1331.[CrossRef] [Google Scholar]
  50. Yokota, A., Tamura, T., Hasegawa, T. & Huang, L. H.(1993).Catenuloplanes japonicus gen. nov., sp. nov., nom. rev., a new genus of the order Actinomycetales. Int J Syst Bacteriol 43, 805–812.[CrossRef] [Google Scholar]
  51. Zhao, P. J., Wang, H. X., Li, G. H., Li, H. D., Liu, J. & Shen, Y. M.(2007). Secondary metabolites from endophytic Streptomyces sp. Lz531. Chem Biodivers 4, 899–904.[CrossRef] [Google Scholar]
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vol. , part 10, pp. 2527 - 2533

Comparison of 16S rRNA gene signature nucleotide positions of strain YIM 61359 and the most closely related genera. [ PDF] 65 KB



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