Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease

References

1. Antonello A., Weinstein G. W. 1989; Successful treatment of Bacillus alvei endophthalmitis. Am J Ophthalmol 108:454–455 [CrossRef]
   [Google Scholar]
2. Ash C., Priest F. G., Collins D. C. 1993; Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus . Antonie van Leeuwenhoek 64:253–260
   [Google Scholar]
3. Barrero F., Galán F., Marín P., García-Martos P., Capote F. J. 1996; Catheter associated infection by Bacillus macerans in a patient with acute leukemia. Enferm Infecc Microbiol Clin 14:628–629
   [Google Scholar]
4. Bert F., Ouahes O., Lambert-Zechovsky N. 1995; Brain abscess due to Bacillus macerans following a penetrating periorbital injury. J Clin Microbiol 33:1950–1953
   [Google Scholar]
5. Bosshard P. P., Zbinden R., Altwegg M. 2002; Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes. Int J Syst Evol Microbiol 52:2241–2249 [CrossRef]
   [Google Scholar]
6. Daane L. L., Harjono I., Barns S. M., Launen L. A., Palleroni N. J., Häggblom M. M. 2002; PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene-degrading bacterium from the rhizosphere of salt marsh plants. Int J Syst Evol Microbiol 52:131–139
   [Google Scholar]
7. Euzéby J. P. 2009 List of Prokaryotic Names with Standing in Nomenclature ; http://www.bacterio.cict.fr/
   [Google Scholar]
8. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
9. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
   [Google Scholar]
10. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. (editors) 1994 Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology;
    [Google Scholar]
11. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
12. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol 3 pp 21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
13. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
    [Google Scholar]
14. Khianngam S., Akaracharanya A., Tanasupawat S., Lee K. C., Lee J.-S. 2009; Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil. Int J Syst Evol Microbiol 59:564–568 [CrossRef]
    [Google Scholar]
15. Klatte S., Rainey F. A., Kroppenstedt R. M. 1994; Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44:769–773 [CrossRef]
    [Google Scholar]
16. Ko K. S., Kim Y.-S., Lee M. Y., Shin S. Y., Jung D. S., Peck K. R., Song J.-H. 2008; Paenibacillus konsidensis sp. nov., isolated from a patient. Int J Syst Evol Microbiol 58:2164–2168 [CrossRef]
    [Google Scholar]
17. McClung L. S., Toabe R. 1947; The egg yolk plate reaction for the presumptive diagnosis of Clostridium sporogenes and certain species of the gangrene and botulinum groups. J Bacteriol 53:139–147
    [Google Scholar]
18. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. 1977; Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117 [CrossRef]
    [Google Scholar]
19. NCCLS 2003 Performance standards for antimicrobial disk susceptibility tests , 8th edn. Approved. Standard, M2-A8 Wayne, PA: National Committee for Clinical Laboratory Standards;
    [Google Scholar]
20. Paster B. J., Canale-Parola E. 1982; Physiological diversity of rumen spirochetes. Appl Environ Microbiol 43:686–693
    [Google Scholar]
21. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E. 1996; The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092 [CrossRef]
    [Google Scholar]
22. Reboli A. C., Bryan C. S., Farrar W. E. 1989; Bacteremia and infection of a hip prosthesis caused by Bacillus alvei . J Clin Microbiol 27:1395–1396
    [Google Scholar]
23. Roux V., Raoult D. 2004; Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54:1049–1054 [CrossRef]
    [Google Scholar]
24. Roux V., Fenner L., Raoult D. 2008; Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. Int J Syst Evol Microbiol 58:682–687 [CrossRef]
    [Google Scholar]
25. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
26. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids , MIDI Technical Note 101 Newark, DE: MIDI Inc;
    [Google Scholar]
27. Shin Y. K., Lee J.-S., Chun C. O., Kim H.-J., Park Y.-H. 1996; Isoprenoid quinone profiles of Leclercia adecarboxylata KCTC 1036^T . J Microbiol Biotechnol 6:68–69
    [Google Scholar]
28. Skerman V. B. D. 1967 A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
29. Staley J. T. 1968; Prosthecomicrobium and Ancalomicrobium : new prosthecate freshwater bacteria. J Bacteriol 95:1921–1942
    [Google Scholar]
30. Staneck J. L., Roberts G. D. 1974; Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28:226–231
    [Google Scholar]
31. Stanier R. Y., Palleroni N. J., Doudoroff M. 1966; The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43:159–271 [CrossRef]
    [Google Scholar]
32. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
33. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
34. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
35. Uetanabaro A. P., Wahrenburg C., Hunger W., Pukall R., Spröer C., Stackebrandt E., de Canhos V. P., Claus D., Fritze D. 2003; Paenibacillus agarexedens sp. , nov., nom. rev., and Paenibacillus agaridevorans sp. nov. Int J Syst Evol Microbiol 531051–1057 [CrossRef]
    [Google Scholar]
36. Yoon J.-H., Kang S.-J., Yeo S.-H., Oh T.-K. 2005; Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea. Int J Syst Evol Microbiol 55:2339–2344 [CrossRef]
    [Google Scholar]