Phylogenetic analysis of some Sporomusa sub-branch members isolated from human clinical specimens: description of Megasphaera micronuciformis sp. nov.

References

1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
2. Bergthorsson U., Ochman H. 1998; Distribution of chromosome length variation in natural isolates of Escherichia coli . Mol Biol Evol 15:6–16 [CrossRef]
   [Google Scholar]
3. Bladen H. A., Mergenhagen S. E. 1964; Ultrastructures of Veillonella and morphological correlation of an outer membrane with particles associated with endotoxic activity. J Bacteriol 88:1482–1492
   [Google Scholar]
4. Carlier J.-P. 1985; Gas chromatography of fermentation products: its application in diagnosis of anaerobic bacteria. Bull Inst Pasteur 83:57–69
   [Google Scholar]
5. Carlier J.-P., Marchandin H., Jumas-Bilak E., Lorin V., Henry C., Carrière C., Jean-Pierre H. 2002; Anaeroglobus geminatus gen. nov. sp. nov. a novel member of the family Veillonellaceae . Int J Syst Evol Microbiol 52:983–986 [CrossRef]
   [Google Scholar]
6. Collins M. D., Lawson P. A., Willems A., Cordoba J. J., Fernandez-Garayzabal J., Garcia P., Cai J., Hippe H., Farrow J. A. E. 1994; The phylogeny of the genus Clostridium : proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44:812–826 [CrossRef]
   [Google Scholar]
7. Engelmann U., Weiss N. 1985; Megasphaera cerevisiae sp. nov.: a new Gram-negative obligatory anaerobic coccus isolated from spoiled beer. Syst Appl Microbiol 6:287–290 [CrossRef]
   [Google Scholar]
8. Felsenstein J. 1993 phylip (Phylogeny Inference Package) version 3.5c Department of Genetics, University of Washington; Seattle, USA:
   [Google Scholar]
9. Garrity G. M., Holt J. G. 2001; Taxonomic outline of the Archaea and Bacteria . In Bergey's Manual of Systematic Bacteriology , 2nd edn. vol 1 pp 155–166Edited by Boone D. R., Castenholz R. W. New York: Springer;
   [Google Scholar]
10. Gupta R. S. 1998; Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among Archaebacteria , Eubacteria , and Eukaryotes . Microbiol Mol Biol Rev 62:1435–1491
    [Google Scholar]
11. Holdeman L. V., Cato E. P., Moore W. E. C. 1977 Anaerobe Laboratory Manual , 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University;
    [Google Scholar]
12. Kalmokoff M. L., Austin J. W., Whitford M. F., Teather R. M. 2000; Characterization of a major envelope protein from the rumen anaerobe Selenomonas ruminantium OB268. Can J Microbiol 46:295–303 [CrossRef]
    [Google Scholar]
13. Kamio Y., Takahashi H. 1980; Outer membrane proteins and cell surface structure of Selenomonas ruminantium . J Bacteriol 141:899–907
    [Google Scholar]
14. Liu S.-L., Schryvers A. B., Sanderson K. E., Johnston R. N. 1999; Bacterial phylogenetic clusters revealed by genome structure. J Bacteriol 181:6747–6755
    [Google Scholar]
15. Males B. M., Berthold P., Dougherty P. A., Listgarten M. A. 1984; Helical flagellation in Centipeda periodontii , a Gram-negative, anaerobic bacillus from periodontitis lesions. J Gen Microbiol 130:185–191
    [Google Scholar]
16. Marchandin H., Jean-Pierre H., Carrière C., Canovas F., Darbas H., Jumas-Bilak E. 2001; Prosthetic joint infection due to Veillonella dispar . Eur J Clin Microbiol Infect Dis 20:340–342
    [Google Scholar]
17. Morgenstern B. 2002; A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. Appl Math Lett 15:11–16 [CrossRef]
    [Google Scholar]
18. Murray R. G. E., Schleifer K. H. 1994; Taxonomic notes: a proposal for recording the properties of putative taxa of procaryotes. Int J Syst Bacteriol 44:174–176 [CrossRef]
    [Google Scholar]
19. Paster B. J., Boches S. K., Galvin J. L., Ericson R. E., Lau C. N., Levanos V. A., Sahasrabudhe A., Dewhirst F. E. 2001; Bacterial diversity in human subgingival plaque. J Bacteriol 183:3770–3783 [CrossRef]
    [Google Scholar]
20. Reynolds E. S. 1963; The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. J Cell Biol 17:208–212 [CrossRef]
    [Google Scholar]
21. Rogosa M. 1971; Transfer of Veillonella Prévot and Acidaminococcus Rogosa from Neisseriaceae to Veillonellaceae fam. nov., and the inclusion of Megasphaera Rogosa in Veillonellaceae . Int J Syst Bacteriol 21:231–233 [CrossRef]
    [Google Scholar]
22. Rogosa M. 1984; Anaerobic Gram-negative cocci. In Bergey's Manual of Systematic Bacteriology vol 1 pp 680–685Edited by Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
23. Rolph H. J., Lennon A., Riggio M. P., Saunders W. P., MacKenzie D., Coldero L., Bagg J. 2001; Molecular identification of microorganisms from endodontic infections. J Clin Microbiol 39:3282–3289 [CrossRef]
    [Google Scholar]
24. Skerman V. B. D., McGowan V., Sneath P. H. A. editors 1989 Approved Lists of Bacterial Names, (amended edition). Washington, DC: American Society for Microbiology;
    [Google Scholar]
25. Woods C. R., Versalovic J., Koeuth T., Lupski J. R. 1993; Whole-cell repetitive element sequence-based polymerase chain reaction allows rapid assessment of clonal relationships of bacterial isolates. J Clin Microbiol 31:1927–1931
    [Google Scholar]