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Abstract

A novel Gram-negative, non-motile bacterium, designated strain ZS2-28, was isolated from sandy intertidal sediment samples collected from the coastal regions of the Chinese Antarctic Zhongshan Station on the Larsemann Hills, Princess Elizabeth Land, East Antarctica. Strain ZS2-28 was obligately heterotrophic, strictly aerobic, psychrotolerant (growth occurred at 0–33 °C) and moderately halophilic (optimal growth in 7–8 % NaCl). A single major peak at 872–874 nm in the infrared absorption spectrum indicated the presence of bacteriochlorophyll . Poly-β-hydroxybutyrate accumulation and slime production were also detected. The predominant cellular fatty acid was Cω7, with C 3-OH, C, C cyclo, Cω8 cyclo and summed feature 3 (Cω7 and/or iso-C 2-OH) present in smaller amounts. The respiratory quinone was Q-10. The main polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and an unidentified aminolipid. The G+C content of the genomic DNA was 63.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain ZS2-28 formed a distinct evolutionary lineage within the clade containing members of the genera , and of the class . On the basis of its phylogenetic position, as well as its phenotypic and chemotaxonomic characteristics, strain ZS2-28 represents a novel species of a novel genus, for which the name gen. nov., sp. nov. is proposed. The type strain is ZS2-28 ( = CGMCC 1.8894  = LMG 24863).

Funding
This study was supported by the:
  • National High Technology R&D Program of China (Award 2007AA09Z434)
  • National Key Technology R&D Program of China (Award 2006BAB18B07)
  • National Natural Science Foundation of China (Award 30500001 and 30500377)
  • National Infrastructure of Natural Resources for Science and Technology Program of China (Award 2005DKA21209)
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2011-09-01
2024-04-18
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References

  1. Albuquerque L., Santos J., Travassos P., Nobre M. F., Rainey F. A., Wait R., Empadinhas N., Silva M. T., da Costa M. S. 2002; Albidovulum inexpectatum gen. nov., sp. nov., a nonphotosynthetic and slightly thermophilic bacterium from a marine hot spring that is very closely related to members of the photosynthetic genus Rhodovulum . Appl Environ Microbiol 68:4266–4273 [View Article][PubMed]
    [Google Scholar]
  2. Biebl H., Drews G. 1969; [The in vivo spectrum as taxonomic characteristic in distribution studies of Athiorhodaceae]. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg 123:425–452 (in German) [PubMed]
    [Google Scholar]
  3. Boldareva E. N., Bryantseva I. A., Tsapin A., Nelson K., Sorokin D. Yu., Tourova T. P., Boichenko V. A., Stadnichuk I. N., Gorlenko V. M. 2007; The new alkaliphilic bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline Soda Mono Lake (California, United States). Microbiology 76:82–92 [View Article]
    [Google Scholar]
  4. Boldareva E. N., Akimov V. N., Boľchenko V. A., Stadnichuk I. N., Moskalenko A. A., Makhneva Z. K., Gorlenko V. M. 2008; [Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, eastern Siberia)]. Microbiology (English translation of Mikrobiologiia) 77:241–254 (in Russian) [PubMed]
    [Google Scholar]
  5. Buczolits S., Denner E. B. M., Vybiral D., Wieser M., Kämpfer P., Busse H.-J. 2002; Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov.. Int J Syst Evol Microbiol 52:445–456[PubMed]
    [Google Scholar]
  6. Sasikala Ch. K., Ramana Ch. V. 2009; Rhodovulum lacipunicei sp. nov., an obligate sulfide-demanding phototrophic alphaproteobacterium isolated from a purple pond in India. Int J Syst Evol Microbiol 59:1615–1619 [View Article][PubMed]
    [Google Scholar]
  7. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [View Article][PubMed]
    [Google Scholar]
  8. Collins M. D. 1985; Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics pp. 267–287 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
    [Google Scholar]
  9. Eckersley K., Dow C. S. 1980; Rhodopseudomonas blastica sp. nov.: a member of the Rhodospirillaceae . J Gen Microbiol 119:465–473
    [Google Scholar]
  10. Felsenstein J. (2009). phylip (phylogeny inference package), v3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  11. Girija K. R., Sasikala Ch., Ramana Ch. V., Spröer C., Takaichi S., Thiel V., Imhoff J. F. 2010; Rhodobacter johrii sp. nov., an endospore producing cryptic species isolated from semi-arid tropical soils. Int J Syst Evol Microbiol 60:2099–2107 [View Article][PubMed]
    [Google Scholar]
  12. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
  13. Helsel L. O., Hollis D., Steigerwalt A. G., Morey R. E., Jordan J., Aye T., Radosevic J., Jannat-Khah D., Thiry D. et al. 2007; Identification of “Haematobacter,” a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as “Haematobacter massiliensis comb. nov.”. J Clin Microbiol 45:1238–1243 [View Article][PubMed]
    [Google Scholar]
  14. Imhoff J. F. 1991; Polar lipids and fatty acids in the genus Rhodobacter . Syst Appl Microbiol 14:228–234 [CrossRef]
    [Google Scholar]
  15. Kompantseva E. I., Komova A. V., Kostrikina N. A. 2010; Rhodovulum steppense sp. nov., an obligately haloalkaliphilic purple nonsulfur bacterium widespread in saline soda lakes of Central Asia. Int J Syst Evol Microbiol 60:1210–1214 [View Article][PubMed]
    [Google Scholar]
  16. Labrenz M., Collins M. D., Lawson P. A., Tindall B. J., Schumann P., Hirsch P. 1999; Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49:137–147 [View Article][PubMed]
    [Google Scholar]
  17. Labrenz M., Lawson P. A., Tindall B. J., Hirsch P. 2009; Roseibaca ekhonensis gen. nov., sp. nov., an alkalitolerant and aerobic bacteriochlorophyll a-producing alphaproteobacterium from hypersaline Ekho Lake. Int J Syst Evol Microbiol 59:1935–1940 [View Article][PubMed]
    [Google Scholar]
  18. Liu Z. P., Wang B. J., Liu X. Y., Dai X., Liu Y. H., Liu S. J. 2008; Paracoccus halophilus sp. nov., isolated from marine sediment of the South China Sea, China, and emended description of genus Paracoccus Davis 1969. Int J Syst Evol Microbiol 58:257–261 [View Article][PubMed]
    [Google Scholar]
  19. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [View Article]
    [Google Scholar]
  20. Milford A. D., Achenbach L. A., Jung D. O., Madigan M. T. 2000; Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes. Arch Microbiol 174:18–27 [View Article][PubMed]
    [Google Scholar]
  21. Ostle A. G., Holt J. G. 1982; Nile blue A as a fluorescent stain for poly-β-hydroxybutyrate. Appl Environ Microbiol 44:238–241[PubMed]
    [Google Scholar]
  22. Peck L. S., Convey P., Barnes D. K. A. 2006; Environmental constraints on life histories in Antarctic ecosystems: tempos, timings and predictability. Biol Rev Camb Philos Soc 81:75–109[PubMed] [CrossRef]
    [Google Scholar]
  23. Sato K. 1978; Bacteriochlorophyll formation by facultative methylotrophs, Protaminobacter ruber and Pseudomonas AM 1. FEBS Lett 85:207–210 [View Article][PubMed]
    [Google Scholar]
  24. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp. 607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  25. Sorokin D. Y., Tourova T. P., Kuznetsov B. B., Bryantseva I. A., Gorlenko V. M. 2000; [ Roseinatronobacter thiooxidans gen. nov., sp. nov., a new alkaliphilic aerobic bacteriochlorophyll a-containing bacterium isolated from a soda lake]. Microbiology 69, 75–82 (English translation of Mikrobiologiia) 69:89–92 in Russian [PubMed]
    [Google Scholar]
  26. Sorokin D. Y., Tourova T. P., Spiridonova E. M., Rainey F. A., Muyzer G. 2005; Thioclava pacifica gen. nov., sp. nov., a novel facultatively autotrophic, marine, sulfur-oxidizing bacterium from a near-shore sulfidic hydrothermal area. Int J Syst Evol Microbiol 55:1069–1075 [View Article][PubMed]
    [Google Scholar]
  27. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [View Article]
    [Google Scholar]
  28. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
    [Google Scholar]
  29. Tanaka Y., Hanada S., Manome A., Tsuchida T., Kurane R., Nakamura K., Kamagata Y. 2004; Catellibacterium nectariphilum gen. nov., sp. nov., which requires a diffusible compound from a strain related to the genus Sphingomonas for vigorous growth. Int J Syst Evol Microbiol 54:955–959 [View Article][PubMed]
    [Google Scholar]
  30. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  31. van Spanning R. J. M., Stouthamer A. H., Baker S. C., van Verseveld H. W. 2005; Genus XII. Paracoccus Davis 1969, 384AL emend. Ludwig, Mittenhuber and Friedrich 1993, 366. In Bergey’s Manual of Systematic Bacteriology, 2nd edn. vol. 2C pp. 197–204 Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. New York: Springer;
    [Google Scholar]
  32. Venkata Ramana V., Anil Kumar P., Srinivas T. N. R., Sasikala Ch., Ramana Ch. V. 2009; Rhodobacter aestuarii sp. nov., a phototrophic alphaproteobacterium isolated from an estuarine environment. Int J Syst Evol Microbiol 59:1133–1136 [View Article]
    [Google Scholar]
  33. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703[PubMed]
    [Google Scholar]
  34. Wu C., Lu X., Qin M., Wang Y., Ruan J. 1989; Analysis of menaquinone compound in microbial cells by HPLC. Microbiology (English translation of Mikrobiologiia) 16:176–178
    [Google Scholar]
  35. Yu Y., Li H., Zeng Y., Chen B. 2010; Phylogenetic diversity of culturable bacteria from Antarctic sandy intertidal sediments. Polar Biol 33:869–875 [View Article]
    [Google Scholar]
  36. Yurkov V. V. 2006; Aerobic phototrophic Proteobacteria . Prokaryotes 5:562–584 [View Article]
    [Google Scholar]
  37. Zuber H., Cogdell R. J. 1995; Structure and organization of purple bacterial antenna complexes. In Anoxygenic photosynthetic bacteria pp. 315–348 Edited by Blankenship R. E., Madigan M. T., Bauer C. E. Dordrecht: Springer; [View Article]
    [Google Scholar]
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