1887

Abstract

JCM 1494 was isolated in Japan in 1983, and the name was validly published in 1985. Analysis of the 16S rRNA gene sequence showed that LMG 10732 ( = JCM 1494) is located within the genus , with LMG 8443 as its closest relative, showing 99.6 % 16S rRNA gene sequence identity. However, LMG 10732 and LMG 8443 can be distinguished by housekeeping gene sequence analysis, phenotypic characterization and DNA–DNA hybridization. is also genotypically and phenotypically different from the remaining species of the genus , and we therefore propose the reclassification of into the genus as comb. nov. (type strain LMG 10732  = JCM 1494  = ATCC 43045).

Funding
This study was supported by the:
  • JCYL
  • MICINN
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.041897-0
2013-03-01
2024-04-23
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/3/1013.html?itemId=/content/journal/ijsem/10.1099/ijs.0.041897-0&mimeType=html&fmt=ahah

References

  1. Chahboune R., Barrijal S., Moreno S., Bedmar E. J. ( 2011 ). Characterization of Bradyrhizobium species isolated from root nodules of Cytisus villosus grown in Morocco. . Syst Appl Microbiol 34, 440445.[PubMed]
    [Google Scholar]
  2. Chun J., Goodfellow M. ( 1995 ). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. . Int J Syst Bacteriol 45, 240245. [View Article] [PubMed]
    [Google Scholar]
  3. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224229. [View Article]
    [Google Scholar]
  4. Gaunt M. W., Turner S. L., Rigottier-Gois L., Lloyd-Macgilp S. A., Young J. P. W. ( 2001 ). Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. . Int J Syst Evol Microbiol 51, 20372048. [View Article] [PubMed]
    [Google Scholar]
  5. Kennedy C. ( 2005 ). Genus III. Agromonas Ohta and Hattori 1985, 223VP (Effective publication: Ohta and Hattori 1983, 43). . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 2C, pp. 448452. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;. [View Article]
    [Google Scholar]
  6. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  7. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111120. [View Article] [PubMed]
    [Google Scholar]
  8. Mandel M., Marmur J. ( 1968 ). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. . Methods Enzymol 12B, 195206. [View Article]
    [Google Scholar]
  9. Molouba F., Lorquin J., Willems A., Hoste B., Giraud E., Dreyfus B., Gillis M., de Lajudie P., Masson-Boivin C. ( 1999 ). Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group. . Appl Environ Microbiol 65, 30843094.[PubMed]
    [Google Scholar]
  10. Ohta H., Hattori T. ( 1983 ). Agromonas oligotrophica gen. nov., sp. nov., a nitrogen-fixing oligotrophic bacterium. . Antonie van Leeuwenhoek 49, 429446.[PubMed]
    [Google Scholar]
  11. Ohta H., Hattori T. ( 1985 ). Agromonas oligotrophica gen. nov., sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 17. . Int J Syst Bacteriol 35, 223225. [View Article]
    [Google Scholar]
  12. Ramírez-Bahena M. H., Peix A., Rivas R., Camacho M., Rodríguez-Navarro D. N., Mateos P. F., Martínez-Molina E., Willems A., Velázquez E. ( 2009 ). Bradyrhizobium pachyrhizi sp. nov. and Bradyrhizobium jicamae sp. nov., isolated from effective nodules of Pachyrhizus erosus . . Int J Syst Evol Microbiol 59, 19291934. [View Article] [PubMed]
    [Google Scholar]
  13. Rivas R., García-Fraile P., Mateos P. F., Martínez-Molina E., Velázquez E. ( 2007 ). Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera . . Lett Appl Microbiol 44, 181187. [View Article] [PubMed]
    [Google Scholar]
  14. Rivas R., Martens M., de Lajudie P., Willems A. ( 2009 ). Multilocus sequence analysis of the genus Bradyrhizobium . . Syst Appl Microbiol 32, 101110. [View Article] [PubMed]
    [Google Scholar]
  15. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  16. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  17. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 48764882. [View Article] [PubMed]
    [Google Scholar]
  18. van Berkum P., Leibold J. M., Eardly B. D. ( 2006 ). Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.). . Syst Appl Microbiol 29, 207215. [View Article] [PubMed]
    [Google Scholar]
  19. van Berkum P., Leibold J. M., Eardly B. D. ( 2011 ). Bradyrhizobium denitrificans comb. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 139. . Int J Syst Evol Microbiol 61, 10111013. [CrossRef]
    [Google Scholar]
  20. Vinuesa P., León-Barrios M., Silva C., Willems A., Jarabo-Lorenzo A., Pérez-Galdona R., Werner D., Martínez-Romero E. ( 2005a ). Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. . Int J Syst Evol Microbiol 55, 569575. [View Article] [PubMed]
    [Google Scholar]
  21. Vinuesa P., Silva C., Werner D., Martínez-Romero E. ( 2005b ). Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. . Mol Phylogenet Evol 34, 2954. [View Article] [PubMed]
    [Google Scholar]
  22. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463464. [View Article]
    [Google Scholar]
  23. Willems A., Coopman R., Gillis M. ( 2001a ). Phylogenetic and DNA–DNA hybridization analyses of Bradyrhizobium species. . Int J Syst Evol Microbiol 51, 111117.[PubMed]
    [Google Scholar]
  24. Willems A., Doignon-Bourcier F., Goris J., Coopman R., de Lajudie P., De Vos P., Gillis M. ( 2001b ). DNA–DNA hybridization study of Bradyrhizobium strains. . Int J Syst Evol Microbiol 51, 13151322.[PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.041897-0
Loading
/content/journal/ijsem/10.1099/ijs.0.041897-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error