Amphibacillus marinus sp. nov., a member of the genus Amphibacillus isolated from marine mud

References

1. An S. Y., Ishikawa S., Kasai H., Goto K., Yokota A. ( 2007 ). Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan. . Int J Syst Evol Microbiol 57, 2489–2492. [View Article] [PubMed]
   [Google Scholar]
2. Barrow G. I., Feltham R. K. A. (editors) ( 1993 ). Cowan and Steel’s Manual for the Identification of Medical Bacteria, , 3rd edn.. Cambridge:: Cambridge University Press;. [View Article]
   [Google Scholar]
3. Bian J., Song F.-H., Zhang L.-X. ( 2008 ). [Strategies on the construction of high-quality microbial natural product library–a review]. . Wei Sheng Wu Xue Bao 48, 1132–1137 (in Chinese).[PubMed]
   [Google Scholar]
4. Bian J., Li Y., Wang J., Song F.-H., Liu M., Dai H.-Q., Ren B., Gao H., Hu X.-L. & other authors ( 2009 ). Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment. . Int J Syst Evol Microbiol 59, 477–481. [View Article] [PubMed]
   [Google Scholar]
5. Buck J. D. ( 1982 ). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. . Appl Environ Microbiol 44, 992–993.[PubMed]
   [Google Scholar]
6. Cao S.-J., Qu J.-H., Yang J.-S., Sun Q., Yuan H.-L. ( 2008 ). Halolactibacillus alkaliphilus sp. nov., a moderately alkaliphilic and halophilic bacterium isolated from a soda lake in Inner Mongolia, China, and emended description of the genus Halolactibacillus . . Int J Syst Evol Microbiol 58, 2169–2173. [View Article] [PubMed]
   [Google Scholar]
7. Chen Y.-G., Cui X.-L., Zhang Y.-Q., Li W.-J., Wang Y.-X., Xu L.-H., Wen M.-L., Peng Q., Jiang C.-L. ( 2009 ). Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China. . Int J Syst Evol Microbiol 59, 28–33. [View Article] [PubMed]
   [Google Scholar]
8. Claus D., Berkeley R. C. W. ( 1986 ). Genus Bacillus Cohn 1872. . In Bergey’s Manual of Systematic Bacteriology, vol. 2, pp. 1105–1140. Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. . Baltimore:: Williams & Wilkins;.
   [Google Scholar]
9. Collins M. D., Goodfellow M., Minnikin D. E. ( 1980 ). Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. . J Gen Microbiol 118, 29–37.[PubMed]
   [Google Scholar]
10. Dai H. Q., Wang J., Xin Y. H., Pei G., Tang S. K., Ren B., Ward A., Ruan J. S., Li W. J., Zhang L. X. ( 2010 ). Verrucosispora sediminis sp. nov., a cyclodipeptide-producing actinomycete from deep-sea sediment. . Int J Syst Evol Microbiol 60, 1807–1812. [View Article] [PubMed]
    [Google Scholar]
11. Demain A. L., Zhang L.-X. ( 2005 ). Natural Products: Drug Discovery and Therapeutics Medicines, pp. 3–56. Edited by Demain A. L. Z., Zhang L. X. . Totowa, NJ:: Humana;.
    [Google Scholar]
12. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: An approach using the bootstrap. . Evolution 39, 783–791. [View Article]
    [Google Scholar]
13. Felsenstein J. ( 2002 ). phylip (phylogenetic inference package), version 3.6a. Distributed by the author. . Department of Genome Sciences, University of Washington;, Seattle, USA:.
    [Google Scholar]
14. Guindon S., Dufayard J. F., Lefort V., Anisimova M., Hordijk W., Gascuel O. ( 2010 ). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. . Syst Biol 59, 307–321. [View Article] [PubMed]
    [Google Scholar]
15. Hasegawa T., Takizawa M., Tanida S. ( 1983 ). A rapid analysis for chemical grouping of aerobic actinomycetes. . J Gen Appl Microbiol 29, 319–322. [View Article]
    [Google Scholar]
16. Hirota K., Aino K., Nodasaka Y., Morita N., Yumoto I. ( 2012 ). Amphibacillus indicireducens sp. nov., a facultatively alkaliphile that reduces an indigo dye. . Int J Syst Evol Microbiol 63, 421–426.[PubMed]
    [Google Scholar]
17. Horikoshi K. ( 1999 ). Alkaliphiles: some applications of their products for biotechnology. . Microbiol Mol Biol Rev 63, 735–750.[PubMed]
    [Google Scholar]
18. Ishikawa M., Ishizaki S., Yamamoto Y., Yamasato K. ( 2002 ). Paraliobacillus ryukyuensis gen. nov., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. . J Gen Appl Microbiol 48, 269–279. [View Article] [PubMed]
    [Google Scholar]
19. Ishikawa M., Nakajima K., Itamiya Y., Furukawa S., Yamamoto Y., Yamasato K. ( 2005 ). Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. . Int J Syst Evol Microbiol 55, 2427–2439. [View Article] [PubMed]
    [Google Scholar]
20. Kim S. B., Falconer C., Williams E., Goodfellow M. ( 1998 ). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. . Int J Syst Bacteriol 48, 59–68. [View Article] [PubMed]
    [Google Scholar]
21. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
22. Kroppenstedt R. M. ( 1982 ). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. . J Liquid Chromatogr Relat Technol 5, 2359–2367. [View Article]
    [Google Scholar]
23. Mandel M., Marmur J. ( 1968 ). Use of ultraviolet absorbance temperature profiles for determining the guanine plus cytosine content of DNA. . Methods Enzymol 12B, 195–206. [View Article]
    [Google Scholar]
24. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. . J Mol Biol 3, 208–218. [View Article]
    [Google Scholar]
25. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233–241. [View Article]
    [Google Scholar]
26. Niimura Y., Koh E., Yanagida F., Suzuki K.-I., Komagata K., Kozaki M. ( 1990 ). Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic spore forming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase. . Int J Syst Bacteriol 40, 297–301. [View Article]
    [Google Scholar]
27. Pugin B., Blamey J. M., Baxter B. K., Wiegel J. ( 2012 ). Amphibacillus cookii sp. nov., a facultatively aerobic, spore-forming, moderately halophilic, alkalithermotolerant bacterium. . Int J Syst Evol Microbiol 62, 2090–2096. [View Article] [PubMed]
    [Google Scholar]
28. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
29. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids. . USFCC Newsl 20, 16.
    [Google Scholar]
30. Schleifer K. H., Kandler O. ( 1972 ). Peptidoglycan types of bacterial cell walls and their taxonomic implications. . Bacteriol Rev 36, 407–477.[PubMed]
    [Google Scholar]
31. Simmons J. S. ( 1926 ). A culture medium for differentiating organisms of typhoid-colon aerogenes groups and for isolation of certain fungi. . J Infect Dis 39, 209. [CrossRef]
    [Google Scholar]
32. Tamura K., Dudley J., Nei M., Kumar S. ( 2007 ). mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. . Mol Biol Evol 24, 1596–1599. [View Article] [PubMed]
    [Google Scholar]
33. Thompson J. D., Higgins D. G., Gibson T. J. ( 1994 ). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. . Nucleic Acids Res 22, 4673–4680. [View Article] [PubMed]
    [Google Scholar]
34. Wang J., Li Y., Bian J., Tang S.-K., Ren B., Chen M., Li W.-J., Zhang L.-X. ( 2010 ). Prauserella marina sp. nov., isolated from ocean sediment of the South China Sea. . Int J Syst Evol Microbiol 60, 985–989. [View Article] [PubMed]
    [Google Scholar]
35. Wu X. Y., Zheng G., Zhang W. W., Xu X. W., Wu M., Zhu X. F. ( 2010 ). Amphibacillus jilinensis sp. nov., a facultatively anaerobic, alkaliphilic bacillus from a soda lake. . Int J Syst Evol Microbiol 60, 2540–2543. [View Article] [PubMed]
    [Google Scholar]
36. Zhilina T. N., Garnova E. S., Turova T. P., Kostrikina N. A., Zavarzin G. A. ( 2001 ). [Amphibacillus fermentum sp. nov., Amphibacillus tropicus sp. nov.–new alkaliphilic, facultatively anaerobic, saccharolytic Bacilli from Lake Magadi]. . Mikrobiologiia 70, 825–837 (in Russian).[PubMed]
    [Google Scholar]