Desulfotomaculum intricatum sp. nov., a sulfate reducer isolated from freshwater lake sediment

References

1. Acinas S. G., Marcelino L. A., Klepac-Ceraj V., Polz M. F. ( 2004 ). Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. . J Bacteriol 186, 2629–2635. [View Article] [PubMed]
   [Google Scholar]
2. Cord-Ruwisch R. ( 1985 ). A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. . J Microbiol Methods 4, 33–36. [View Article]
   [Google Scholar]
3. Dowling N. J. E., Widdel F., White D. C. ( 1986 ). Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulphate-reducers and other sulphide-forming bacteria. . J Gen Microbiol 132, 1815–1825.
   [Google Scholar]
4. Junier P., Junier T., Podell S., Sims D. R., Detter J. C., Lykidis A., Han C. S., Wigginton N. S., Gaasterland T., Bernier-Latmani R. ( 2010 ). The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. . Environ Microbiol 12, 2738–2754.[PubMed]
   [Google Scholar]
5. Katayama-Fujimura Y., Komatsu Y., Kuraishi H., Kaneko T. ( 1984 ). Estimation of DNA base composition by high-performance liquid chromatography of its nuclease PI hydrolysate. . Agric Biol Chem 48, 3169–3172. [View Article]
   [Google Scholar]
6. Klappenbach J. A., Saxman P. R., Cole J. R., Schmidt T. M. ( 2001 ). rrndb: the Ribosomal RNA Operon Copy Number Database. . Nucleic Acids Res 29, 181–184. [View Article] [PubMed]
   [Google Scholar]
7. Kojima H., Fukui M. ( 2010 ). Sulfuricella denitrificans gen. nov., sp. nov., a sulfur-oxidizing autotroph isolated from a freshwater lake. . Int J Syst Evol Microbiol 60, 2862–2866. [View Article] [PubMed]
   [Google Scholar]
8. Kojima H., Iwata T., Fukui M. ( 2009 ). DNA-based analysis of planktonic methanotrophs in a stratified lake. . Freshw Biol 54, 1501–1509. [View Article]
   [Google Scholar]
9. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–175. Edited by Stackebrandt E., Goodfellow M. . New York:: Wiley;.
   [Google Scholar]
10. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
    [Google Scholar]
11. Meyer B., Kuever J. ( 2007 ). Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene. . Appl Environ Microbiol 73, 7664–7679. [View Article] [PubMed]
    [Google Scholar]
12. Muyzer G., Hottenträger S., Teske A., Wawer C. ( 1996 ). Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA: a new molecular approach to analyze the genetic diversity of mixed microbial communities. . In Molecular Microbial Ecology Manual, pp. 3.4.4/1–3.4.4/23. Edited by Akkermans A. D. L., Van Elsas J. D., De Bruijn F. . Dordrecht:: Kluwer Academic;.
    [Google Scholar]
13. Santos S. R., Ochman H. ( 2004 ). Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. . Environ Microbiol 6, 754–759. [View Article]
    [Google Scholar]
14. Spormann A. M., Thauer R. K. ( 1988 ). Anaerobic acetate oxidation to CO₂ by Desulfotomaculum acetoxidans . . Arch Microbiol 150, 374–380. [View Article]
    [Google Scholar]
15. Spring S., Lapidus A., Schröder M., Gleim D., Sims D., Meincke L., Glavina Del Rio T., Tice H., Copeland A. & other authors ( 2009 ). Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). . Stand Genomic Sci 1, 242–253. [View Article] [PubMed]
    [Google Scholar]
16. Stackebrandt E., Sproer C., Rainey F. A., Burghardt J., Pauker O., Hippe H. ( 1997 ). Phylogenetic analysis of the genus Desulfotomaculum: evidence for the misclassification of Desulfotomaculum guttoideum and description of Desulfotomaculum orientis as Desulfosporosinus orientis gen. nov., comb. nov. . Int J Syst Evol Microbiol 53, 1439–1443. [View Article] [PubMed]
    [Google Scholar]
17. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
18. Tourova T. P., Kuznetzov B. B., Novikova E. V., Poltaraus A. B., Nazina T. N. ( 2001 ). Heterogeneity of the nucleotide sequences of the 16S rRNA genes of the type strain of Desulfotomaculum kuznetsovii . . Mikrobiologiia 70, 788–795.[PubMed]
    [Google Scholar]
19. Widdel F., Bak F. ( 1992 ). Gram-negative mesophilic sulfate-reducing bacteria. . In The Prokaryotes, , 2nd edn., vol. 4, pp. 3352–3378. Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. . New York:: Springer;. [CrossRef]
    [Google Scholar]
20. Widdel F., Pfennig N. ( 1977 ). A new anaerobic, sporing, acetate-oxidizing, sulfate-reducing bacterium, Desulfotomaculum (emend.) acetoxidans . . Arch Microbiol 112, 119–122. [View Article] [PubMed]
    [Google Scholar]
21. Widdel F., Pfennig N. ( 1981 ). Sporulation and further nutritional characteristics of Desulfotomaculum acetoxidans . . Arch Microbiol 129, 401–402. [View Article] [PubMed]
    [Google Scholar]