Enterococcus saccharolyticus subsp. taiwanensis subsp. nov., isolated from broccoli

References

1. Ampe F., Sirvent A., Zakhia N. ( 2001 ). Dynamics of the microbial community responsible for traditional sour cassava starch fermentation studied by denaturing gradient gel electrophoresis and quantitative rRNA hybridization. . Int J Food Microbiol 65, 45–54. [View Article] [PubMed]
   [Google Scholar]
2. ben Omar N., Ampe F. ( 2000 ). Microbial community dynamics during production of the Mexican fermented maize dough pozol. . Appl Environ Microbiol 66, 3664–3673. [View Article] [PubMed]
   [Google Scholar]
3. Chen Y. S., Yanagida F., Hsu J. S. ( 2006 ). Isolation and characterization of lactic acid bacteria from suan-tsai (fermented mustard), a traditional fermented food in Taiwan. . J Appl Microbiol 101, 125–130. [View Article] [PubMed]
   [Google Scholar]
4. Chen Y. S., Miyashita M., Suzuki K., Sato H., Hsu J. S., Yanagida F. ( 2010 ). Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia). . Int J Syst Evol Microbiol 60, 1914–1917. [View Article] [PubMed]
   [Google Scholar]
5. Chen Y. S., Liou M. S., Ji S. H., Yu C. R., Pan S. F., Yanagida F. ( 2013 ). Isolation and characterization of lactic acid bacteria from Yan-tsai-shin (fermented broccoli stems), a traditional fermented food in Taiwan. . J Appl Microbiol 115, 125–132. [View Article] [PubMed]
   [Google Scholar]
6. Dellaglio F., Felis G. E., Castioni A., Torriani S., Germond J. E. ( 2005 ). Lactobacillus delbrueckii subsp. indicus subsp. nov., isolated from Indian dairy products. . Int J Syst Evol Microbiol 55, 401–404. [View Article] [PubMed]
   [Google Scholar]
7. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
8. Farrow J. A. E., Kruze J., Phillips B. A., Bramley A. J., Collins M. D. ( 1984 ). Taxonomic studies on Streptococcus bovis and Streptococcus equinus: description of Streptococcus alactolyticus sp. nov. and Streptococcus saccharolyticus sp. nov.. Syst Appl Microbiol 5, 467–482. [View Article]
   [Google Scholar]
9. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
10. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
    [Google Scholar]
11. Fitch W. M. ( 1977 ). On the problem of discovering the most parsimonious tree. . Am Nat 111, 223–257. [View Article]
    [Google Scholar]
12. Garrity G. M., Labeda D. P., Oren A. ( 2011 ). Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey. . Int J Syst Evol Microbiol 61, 2775–2780. [View Article]
    [Google Scholar]
13. Goris J., Suzuki K., De Vos P., Nakase T., Kersters K. ( 1998 ). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. . Can J Microbiol 44, 1148–1153. [View Article]
    [Google Scholar]
14. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
    [Google Scholar]
15. Kozaki M., Uchimura T., Okada S. ( 1992 ). In Experimental Manual of Lactic Acid Bacteria, pp. 29–72. Tokyo:: Asakurashoten;.
    [Google Scholar]
16. Layton B. A., Walters S. P., Lam L. H., Boehm A. B. ( 2010 ). Enterococcus species distribution among human and animal hosts using multiplex PCR. . J Appl Microbiol 109, 539–547.[PubMed]
    [Google Scholar]
17. Morandi S., Cremonesi P., Povolo M., Brasca M. ( 2012 ). Enterococcus lactis sp. nov., from Italian raw milk cheeses. . Int J Syst Evol Microbiol 62, 1992–1996. [View Article] [PubMed]
    [Google Scholar]
18. Naser S. M., Thompson F. L., Hoste B., Gevers D., Dawyndt P., Vancanneyt M., Swings J. ( 2005 ). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. . Microbiology 151, 2141–2150. [View Article] [PubMed]
    [Google Scholar]
19. Poli A., Guven K., Romano I., Pirinccioglu H., Guven R. G., Euzeby J. P., Matpan F., Acer O., Orlando P., Nicolaus B. ( 2012 ). Geobacillus subterraneus subsp. aromaticivorans subsp. nov., a novel thermophilic and alkaliphilic bacterium isolated from a hot spring in Sırnak, Turkey. . J Gen Appl Microbiol 58, 437–446. [View Article] [PubMed]
    [Google Scholar]
20. Rahkila R., Johansson P., Säde E., Björkroth J. ( 2011 ). Identification of enterococci from broiler products and a broiler processing plant and description of Enterococcus viikkiensis sp. nov.. Appl Environ Microbiol 77, 1196–1203. [View Article] [PubMed]
    [Google Scholar]
21. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
22. Sistek V., Maheux A. F., Boissinot M., Bernard K. A., Cantin P., Cleenwerck I., De Vos P., Bergeron M. G. ( 2012 ). Enterococcus ureasiticus sp. nov. and Enterococcus quebecensis sp. nov., isolated from water. . Int J Syst Evol Microbiol 62, 1314–1320. [View Article] [PubMed]
    [Google Scholar]
23. Švec P., Vancanneyt M., Devriese L. A., Naser S. M., Snauwaert C., Lefebvre K., Hoste B., Swings J. ( 2005a ). Enterococcus aquimarinus sp. nov., isolated from sea water. . Int J Syst Evol Microbiol 55, 2183–2187. [View Article] [PubMed]
    [Google Scholar]
24. Švec P., Vancanneyt M., Seman M., Snauwaert C., Lefebvre K., Sedláček I., Swings J. ( 2005b ). Evaluation of (GTG)₅-PCR for identification of Enterococcus spp.. FEMS Microbiol Lett 247, 59–63. [View Article] [PubMed]
    [Google Scholar]
25. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125–128. [View Article]
    [Google Scholar]
26. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
27. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
28. Tyrrell G. J., Turnbull L., Teixeira L. M., Lefebvre J., Carvalho M. G., Facklam R. R., Lovgren M. ( 2002 ). Enterococcus gilvus sp. nov. and Enterococcus pallens sp. nov. isolated from human clinical specimens. . J Clin Microbiol 40, 1140–1145. [View Article] [PubMed]
    [Google Scholar]
29. Versalovic J., Schneider M., De Bruijn F. J., Lupski J. R. ( 1994 ). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. . Methods Mol Cell Biol 5, 25–40.
    [Google Scholar]
30. Wang L. T., Lee F. L., Tai C. J., Yokota A., Kuo H. P. ( 2007 ). Reclassification of Bacillus axarquiensis Ruiz-Garcia et al. 2005 and Bacillus malacitensis Ruiz-Garcia et al. 2005 as later heterotypic synonyms of Bacillus mojavensis Roberts et al. 1994. . Int J Syst Evol Microbiol 57, 1663–1667. [View Article] [PubMed]
    [Google Scholar]
31. Watts J. L. ( 1989 ). Evaluation of the Rapid Strep system for identification of gram-positive, catalase-negative cocci isolated from bovine intramammary infections. . J Dairy Sci 72, 2728–2732. [View Article] [PubMed]
    [Google Scholar]