Lactobacillus silagei sp. nov., isolated from orchardgrass silage

References

1. Cai Y., Pang H., Kitahara M., Ohkuma M. ( 2012 ). Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus . . Int J Syst Evol Microbiol 62, 1140–1144. [View Article] [PubMed]
   [Google Scholar]
2. Ennahar S., Cai Y., Fujita Y. ( 2003 ). Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis. . Appl Environ Microbiol 69, 444–451. [View Article] [PubMed]
   [Google Scholar]
3. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid–deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
4. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
5. Harrison J. H., Blauwiekel R., Stokes M. R. ( 1994 ). Fermentation and utilization of grass silage. . J Dairy Sci 77, 3209–3235. [View Article] [PubMed]
   [Google Scholar]
6. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
   [Google Scholar]
7. Kitahara M., Sakamoto M., Benno Y. ( 2010 ). Lactobacillus similis sp. nov., isolated from fermented cane molasses. . Int J Syst Evol Microbiol 60, 187–190. [View Article] [PubMed]
   [Google Scholar]
8. Komagata K., Suzuki K. ( 1987 ). Lipid and cell-wall analysis in bacterial systematics. . Method Microbiol 19, 161–207. [View Article]
   [Google Scholar]
9. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
   [Google Scholar]
10. Li Y., Nishino N. ( 2011 ). Monitoring the bacterial community of maize silage stored in a bunker silo inoculated with Enterococcus faecium, Lactobacillus plantarum and Lactobacillus buchneri . . J Appl Microbiol 110, 1561–1570. [View Article] [PubMed]
    [Google Scholar]
11. McDonald P., Henderson N., Heron S. ( 1991 ). The Biochemistry of Silage, , 2nd edn.. Marlow:: Chalcombe Publications;.
    [Google Scholar]
12. Naser S. M., Thompson F. L., Hoste B., Gevers D., Dawyndt P., Vancanneyt M., Swings J. ( 2005 ). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. . Microbiology 151, 2141–2150. [View Article] [PubMed]
    [Google Scholar]
13. Naser S. M., Dawyndt P., Hoste B., Gevers D., Vandemeulebroecke K., Cleenwerck I., Vancanneyt M., Swings J. ( 2007 ). Identification of lactobacilli by pheS and rpoA gene sequence analyses. . Int J Syst Evol Microbiol 57, 2777–2789. [View Article] [PubMed]
    [Google Scholar]
14. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
15. Sakamoto M., Suzuki M., Umeda M., Ishikawa I., Benno Y. ( 2002 ). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov.. Int J Syst Evol Microbiol 52, 841–849. [View Article] [PubMed]
    [Google Scholar]
16. Stevenson D. M., Muck R. E., Shinners K. J., Weimer P. J. ( 2006 ). Use of real time PCR to determine population profiles of individual species of lactic acid bacteria in alfalfa silage and stored corn stover. . Appl Microbiol Biotechnol 71, 329–338. [View Article] [PubMed]
    [Google Scholar]
17. Suzuki K., Sasaki J., Uramoto M., Nakase T., Komagata K. ( 1996 ). Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for “Corynebacterium mediolanum” Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. . Int J Syst Bacteriol 46, 88–93. [View Article] [PubMed]
    [Google Scholar]
18. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
19. Tindall B. J., Rosselló-Móra R., Busse H. J., Ludwig W., Kämpfer P. ( 2010 ). Notes on the characterization of prokaryote strains for taxonomic purposes. . Int J Syst Evol Microbiol 60, 249–266. [View Article] [PubMed]
    [Google Scholar]
20. Tohno M., Kobayashi H., Nomura M., Kitahara M., Ohkuma M., Uegaki R., Cai Y. M. ( 2012a ). Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. . Anim Sci J 83, 111–120. [View Article] [PubMed]
    [Google Scholar]
21. Tohno M., Kobayashi H., Nomura M., Uegaki R., Cai Y. M. ( 2012b ). Identification and characterization of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage. . Anim Sci J 83, 318–330. [View Article] [PubMed]
    [Google Scholar]
22. Tohno M., Kobayashi H., Tajima K., Uegaki R. ( 2012c ). Strain-dependent effects of inoculation of Lactobacillus plantarum subsp. plantarum on fermentation quality of paddy rice (Oryza sativa L. subsp. japonica) silage. . FEMS Microbiol Lett 337, 112–119. [View Article] [PubMed]
    [Google Scholar]
23. Tohno M., Kitahara M., Inoue H., Uegaki R., Irisawa T., Ohkuma M., Tajima K. ( 2013a ). Weissella oryzae sp. nov., isolated from fermented rice grains. . Int J Syst Evol Microbiol 63, 1417–1420. [View Article] [PubMed]
    [Google Scholar]
24. Tohno M., Kitahara M., Irisawa T., Inoue H., Uegaki R., Ohkuma M., Tajima K. ( 2013b ). Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica). . Int J Syst Evol Microbiol 63, 2957–2962. [View Article] [PubMed]
    [Google Scholar]
25. Tohno M., Kitahara M., Irisawa T., Masuda T., Uegaki R., Ohkuma M., Tajima K. ( 2013c ). Description of Lactobacillus iwatensis sp. nov., isolated from orchardgrass (Dactylis glomerata L.) silage in Iwate, Japan, and Lactobacillus backii sp. nov.. Int J Syst Evol Microbiol 63, 3854–3860. [View Article] [PubMed]
    [Google Scholar]
26. Tohno M., Kitahara M., Uegaki R., Irisawa T., Ohkuma M., Tajima K. ( 2013d ). Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage. . Int J Syst Evol Microbiol 63, 2526–2531. [View Article] [PubMed]
    [Google Scholar]