Streptomyces turgidiscabies and Streptomyces reticuliscabiei: one genomic species, two pathogenic groups

References

1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
2. Bonde M. R., McIntyre G. A. 1968; Isolation and biology of a Streptomyces sp. causing potato scab in soils below pH 5.0. Am Potato J 45:273–278 [CrossRef]
   [Google Scholar]
3. Bouchek-Mechiche K., Guérin C., Jouan B., Gardan L. 1998; Streptomyces species isolated from potato scabs in France: numerical analysis of “Biotype-100” carbon source assimilation data. Res Microbiol 149:653–663 [CrossRef]
   [Google Scholar]
4. Bouchek-Mechiche K., Gardan L., Normand P., Jouan B. 2000a DNA relatedness among strains of Streptomyces pathogenic to potato in France: description of three new species,S. europaeiscabiei sp. nov. and S. stelliscabiei sp. nov. associated with common scab, and S. reticuliscabiei sp. nov. associated with netted scab. Int J Syst Evol Microbiol 50, 91–99 [CrossRef]
5. Bouchek-Mechiche K., Pasco C., Andrivon D., Jouan B. 2000b; Differences in host range, pathogenicity to potato cultivars and response to soil temperature among Streptomyces species causing common and netted scab in France. Plant Pathol 49:3–10 [CrossRef]
   [Google Scholar]
6. Bukhalid R. A., Chung S. Y., Loria R. 1998; nec1 , A gene conferring a necrogenic phenotype, is conserved in plant-pathogenic Streptomyces spp. and linked to a transposase pseudogene. Mol Plant-Microbe Interact 11:960–967 [CrossRef]
   [Google Scholar]
7. Bukhalid R. A., Takeuchi T., Labeda D., Loria R. 2002; Horizontal transfer of the plant virulence gene, nec1 , and flanking sequences among genetically distinct Streptomyces strains in the Diastatochromogenes cluster. Appl Environ Microbiol 68:738–744 [CrossRef]
   [Google Scholar]
8. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
9. Healy F. G., Wach M., Krasnoff S. B., Gibson D. M., Loria R. 2000; The txtAB genes of the plant pathogen Streptomyces acidiscabies encode a peptide synthetase required for phytotoxin thaxtomin A production and pathogenicity. Mol Microbiol 38:794–804 [CrossRef]
   [Google Scholar]
10. Helgason E., Økstad O. A., Caugant D. A., Johansen H. A., Fouet A., Mock M., Hegna I., Kolstø A.-B. 2000; Bacillus anthracis , Bacillus cereus , and Bacillus thuringiensis –one species on the basis of genetic evidence. Appl Environ Microbiol 66:2627–2630 [CrossRef]
    [Google Scholar]
11. Kers J. A., Cameron K. D., Joshi M. V., Bukhalid R. A., Morello J. E., Wach M. J., Gibson D. M., Loria R. 2005; A large, mobile pathogenicity island confers plant pathogenicity on Streptomyces species. Mol Microbiol 55:1025–1033
    [Google Scholar]
12. King R. R., Lawrence C. H., Clark M. C. 1991; Correlation of phytotoxin production with pathogenicity of Streptomyces scabies isolates from scab infected potato tubers. Am Potato J 68:675–680 [CrossRef]
    [Google Scholar]
13. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
14. Kluge A. G., Farris J. S. 1969; Quantitative phyletics and the evolution of anurans. Syst Zool 18:1–32 [CrossRef]
    [Google Scholar]
15. Lambert D. H., Loria H. 1989a; Streptomyces scabies sp. nov., nom. rev.. Int J Syst Bacteriol 39387–392 [CrossRef]
    [Google Scholar]
16. Lambert D. H., Loria H. 1989b; Streptomyces acidiscabies sp. nov. Int J Syst Bacteriol 39:393–396 [CrossRef]
    [Google Scholar]
17. Loria R., Bukhalid R. A., Creath R. A., Leiner R. H., Olivier M., Steffens J. C. 1995; Differential production of thaxtomins by pathogenic Streptomyces species in vitro . Phytopathology 85:537–541 [CrossRef]
    [Google Scholar]
18. Loria R., Bukhalid R. A., Fry B. A., King R. R. 1997; Plant pathogenicity in the genus Streptomyces . Plant Dis 77:836–846
    [Google Scholar]
19. Miyajima K., Tanaka F., Takeuchi T., Kuninaga S. 1998; Streptomyces turgidiscabies sp. nov. Int J Syst Bacteriol 48:495–502 [CrossRef]
    [Google Scholar]
20. Normand P., Orso S., Cournoyer B., Jeannin P., Chapelon C., Dawson J., Evtushenko L., Misra A. K. 1996; Molecular phylogeny of the genus Frankia and related genera and emendation of family Frankiaceae . Int J Syst Bacteriol 46:1–9 [CrossRef]
    [Google Scholar]
21. Park D. H., Kim J. S., Kwon S. W., Wilson C., Yu Y. M., Hur J. H., Lim C. K. 2003 Streptomyces luridiscabiei sp. nov., Streptomyces puniciscabiei sp. nov. and Streptomyces niveiscabiei sp. nov., which cause potato common scab disease in Korea. Int J Syst Evol Microbiol 53, 2049–2054 [CrossRef]
22. Perrière G., Gouy M. 1996; WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78:364–369 [CrossRef]
    [Google Scholar]
23. Pridham T. G., Gottlieb D. 1948; The utilization of carbon compounds by some Actinomycetales as an aid for species determination. J Bacteriol 56:107–114
    [Google Scholar]
24. Pridham T. G., Anderson P., Foley C., Lindenfelser L. A., Hesseltine C. W., Benedict R. G. 1956; A selection of media for maintenance and taxonomic study of Streptomyces . Antibiot Annu 1956–57947–953
    [Google Scholar]
25. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
26. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
27. Shirling E. B., Gottlieb D. 1968a; Cooperative description of type cultures of Streptomyces . II. Species descriptions from first study. Int J Syst Bacteriol 18:69–189 [CrossRef]
    [Google Scholar]
28. Shirling E. B., Gottlieb D. 1968b; Cooperative description of type cultures of Streptomyces . III. Additional species descriptions from the first and second studies. Int J Syst Bacteriol 18:279–392 [CrossRef]
    [Google Scholar]
29. Shirling E. B., Gottlieb D. 1969; Cooperative description of type cultures of Streptomyces . IV. Species descriptions from the second, third and fourth studies. Int J Syst Bacteriol 19:391–512 [CrossRef]
    [Google Scholar]
30. Sneath P. H. A., Sokal R. R. 1973 Numerical Taxonomy: the Principles and Practice of Numerical Classification San Francisco: Freeman & Co;
    [Google Scholar]
31. Stackebrandt E., Frederiksen W., Garrity G. M. 10 other authors 2002; Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047 [CrossRef]
    [Google Scholar]
32. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
33. Wanner L. A. 2004; Field isolates of Streptomyces differ in pathogenicity and virulence on radish. Plant Dis 88:785–796 [CrossRef]
    [Google Scholar]
34. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]