1887

Abstract

A coccoid actinobacterium strain (designated YIM 70178) was isolated from a soil sample collected in Qinghai Province, China. The isolate grew well with an optimum salt concentration of 10–15 % (KCl, w/v) but scarcely or not at all without salt. The cell-wall peptidoglycan type was A4, -lys–gly–-Glu. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, an unknown phospholipid and an unknown glycolipid. The predominant menaquinones were MK-8 and MK-9. The major fatty acid was anteiso-C. The DNA G+C content was 57·9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 70178 was most closely related to the type strain of . DNA–DNA hybridization and comparison of physiological and chemotaxonomic characteristics demonstrated that strain YIM 70178 was different from . The name sp. nov. is proposed, with strain YIM 70178 (=DSM 16377=KCTC 19047) as the type strain. Based on the phenotypic characteristics and phylogenetic position, as determined by 16S rRNA gene analysis and 16S rRNA signature nucleotide data, the genus description of is therefore emended and strains YIM 70085 and YIM 70178 represent a novel family of the suborder e, for which the name fam. nov. is proposed.

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2005-09-01
2024-04-20
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References

  1. Al-Tai A. M., Ruan J. S. 1994; Nocardiopsis halophila sp. nov., a new halophilic actinomycete isolated from soil. Int J Syst Bacteriol 44:474–478 [CrossRef]
    [Google Scholar]
  2. Altenburger P., Kämpfer P., Schumann P., Steiner R., Lubitz W., Busse H. J. 2002; Citricoccus muralis gen. nov., sp. nov. a novel actinobacterium isolated from a medieval wall painting. Int J Syst Evol Microbiol 52:2095–2100 [CrossRef]
    [Google Scholar]
  3. Chen H.-H., Li W.-J., Tang S.-K., Kroppenstedt R. M., Stackebrandt E., Xu L.-H., Jiang C.-L. 2004; Corynebacterium halotolerans sp. nov., isolated from saline soil in the west of China. Int J Syst Evol Microbiol 54:779–782 [CrossRef]
    [Google Scholar]
  4. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [CrossRef]
    [Google Scholar]
  5. Fan Y., Jin Z., Tong J., Li W., Pasciak M., Gamian A., Liu Z., Huang Y. 2002; Rothia amarae sp. nov., from sludge of a foul water sewer. Int J Syst Evol Microbiol 52:2257–2260 [CrossRef]
    [Google Scholar]
  6. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [CrossRef]
    [Google Scholar]
  7. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
  8. Garrity G. M., Holt J. G. 2001; Taxonomic outline of the Archaea and Bacteria . In Bergey's Manual of Systematic Bacteriology , 2nd edn., vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria. pp  155–166 Edited by Boone D. R., Castenholz R. W. New York: Springer-Verlag;
    [Google Scholar]
  9. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. 1974; Nocardia coeliaca , Nocardia autotrophica , and the nocardin strain. Int J Syst Bacteriol 24:54–63 [CrossRef]
    [Google Scholar]
  10. Gupta P., Reddy G. S. N., Delille D., Shivaji S. 2004; Arthrobacter gangotriensis sp. nov. and Arthrobacter kerguelensis sp. nov. from Antarctica. Int J Syst Evol Microbiol 54:2375–2378 [CrossRef]
    [Google Scholar]
  11. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
  12. Jahnke K. D. 1992; BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15:61–73 [CrossRef]
    [Google Scholar]
  13. Kelly K. L. 1964 Inter-Society Color Council – National Bureau of Standards Color-Name Charts Illustrated with Centroid Colors Washington, DC: US Government Printing Office;
    [Google Scholar]
  14. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
  15. Kimura M. 1983 The Neutral Theory of Molecular Evolution Cambridge: Cambridge University Press;
    [Google Scholar]
  16. Kumar S., Tamura K., Jakobsen I. B., Nei M. 2001; mega2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245 [CrossRef]
    [Google Scholar]
  17. Li W.-J., Chen H.-H., Xu P., Zhang Y.-Q., Schumann P., Tang S.-K., Xu L.-H., Jiang C.-L. 2004a; Yania halotolerans gen. nov., sp. nov. a novel member of the suborder Micrococcineae from saline soil in China. Int J Syst Evol Microbiol 54:525–531 [CrossRef]
    [Google Scholar]
  18. Li W.-J., Chen H.-H., Zhang Y.-Q., Schumann P., Stackebrandt E., Xu L.-H., Jiang C.-L. 2004b; Nesterenkonia halotolerans sp. nov. and Nesterenkonia xinjiangensis sp. nov., actinobacteria from saline soils in the west of China. Int J Syst Evol Microbiol 54:837–841 [CrossRef]
    [Google Scholar]
  19. Li Y., Kawamura Y., Fujiwara N., Naka T., Liu H., Huang X., Kobayashi K., Ezaki T. 2004; Rothia aeria sp. nov., Rhodococcus baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from air in the Russian space laboratory Mir. Int J Syst Evol Microbiol 54, 827–835 [CrossRef]
  20. Li W.-J., Chen H.-H., Kim C.-J., Zhang Y.-Q., Park D.-J., Lee J.-C., Xu L.-H., Jiang C.-L. 2005; Nesterenkonia sandarakina sp. nov. and Nesterenkonia lutea sp. nov. novel actinobacteria, and emended description of the genus Nesterenkonia . Int J Syst Evol Microbiol 55:463–466 [CrossRef]
    [Google Scholar]
  21. Liu H., Xu Y., Ma Y., Zhou P. 2000; Characterization of Micrococcus antarcticus sp. nov., a psychrophilic bacterium from Antarctica. Int J Syst Evol Microbiol 50:715–719 [CrossRef]
    [Google Scholar]
  22. Margesin R., Schumann P., Spröer C., Gounot A. M. 2004; Arthrobacter psychrophenolicus sp. nov., isolated from an alpine ice cave. Int J Syst Evol Microbiol 54:2067–2072 [CrossRef]
    [Google Scholar]
  23. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
  24. Reddy G. S. N., Aggarwal R. K., Matsumoto G. I., Shivaji S. 2000; Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50:1553–1561 [CrossRef]
    [Google Scholar]
  25. Reddy G. S. N., Prakash J. S. S., Matsumoto G. I., Stackebrandt E., Shivaji S. 2002; Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 52:1017–1021 [CrossRef]
    [Google Scholar]
  26. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  27. Stackebrandt E., Schumann P. 2000; Description of Bogoriellaceae fam. nov., Dermacoccaceae fam. nov., Rarobacteraceae fam. nov. and Sanguibacteraceae fam. nov. and emendation of some families of the suborder Micrococcineae . Int J Syst Evol Microbiol 50:1279–1285 [CrossRef]
    [Google Scholar]
  28. Stackebrandt E., Rainey F. A., Ward-Rainey N. L. 1997; Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491 [CrossRef]
    [Google Scholar]
  29. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
    [Google Scholar]
  30. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  31. Wieser M., Denner E. B. M., Kämpfer P. 10 other authors 2002; Emended descriptions of the genus Micrococcus , Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al . 1974). Int J Syst Evol Microbiol 52:629–637
    [Google Scholar]
  32. Xu P., Li W.-J., Xu L.-H., Jiang C.-L. 2003; A microwave-based method for genomic DNA extraction from Actinomycetes. Microbiology 30:73–75 (in Chinese)
    [Google Scholar]
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