Shinella yambaruensis sp. nov., a 3-methyl-sulfolane-assimilating bacterium isolated from soil

References

1. An, D.-S., Im, W.-T., Yang, H.-C. & Lee, S.-T.(2006).Shinella granuli gen. nov., sp. nov., and proposal of the reclassification of Zoogloea ramigera ATCC 19623 as Shinella zoogloeoides sp. nov. Int J Syst Evol Microbiol 56, 443–448.[CrossRef] [Google Scholar]
2. Chambel, L., Chelo, I. M., Zé-Zé, L., Pedro, L. G., Santos, M. A. & Tenreiro, R.(2006).Leuconostoc pseudoficulneum sp. nov., isolated from a ripe fig. Int J Syst Evol Microbiol 56, 1375–1381.[CrossRef] [Google Scholar]
3. Choi, Y. J., Cho, K. W., Cho, B. W. & Yeo, Y.-K.(2002). Optimization of the sulfolane extraction plant based on modeling and simulation. Ind Eng Chem Res 41, 5504–5509.[CrossRef] [Google Scholar]
4. Fedorak, P. M. & Coy, D. L.(1996). Biodegradation of sulfolane in soil and groundwater samples from a sour gas plant site. Environ Technol 17, 1093–1102.[CrossRef] [Google Scholar]
5. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
6. Fitzgerald, K. J. & Richardson, J. A.(1966). How gas composition affects treating process selection. Hydrocarbon Proc 45, 127–130. [Google Scholar]
7. Greene, E. A. & Fedorak, P. M.(1998). A differential medium for the isolation and enumeration of sulfolane-degrading bacteria. J Microbiol Methods 33, 255–262.[CrossRef] [Google Scholar]
8. Greene, E. A., Beatty, P. H. & Fedorak, P. M.(2000). Sulfolane degradation by mixed cultures and a bacterial isolate identified as a Variovorax sp. Arch Microbiol 174, 111–119.[CrossRef] [Google Scholar]
9. Hanada, S., Takaichi, S., Matsuura, K. & Nakamura, K.(2002).Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int J Syst Evol Microbiol 52, 187–193. [Google Scholar]
10. Hänninen, M. L., Happonen, I., Saari, S. & Jalava, K.(1996). Culture and characteristics of Helicobacter bizzozeronii, a new canine gastric Helicobacter sp. Int J Syst Bacteriol 46, 160–166.[CrossRef] [Google Scholar]
11. Kim, C. G., Clarke, W. P. & Lockington, D.(1999). Feasibility test of biological degradation of heterocyclic sulfur compounds in anaerobic state. J Environ Sci Health A Tox Hazard Subst Environ Eng A34, 899–918. [Google Scholar]
12. Kimura, M.(1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef] [Google Scholar]
13. Matsui, T., Hirasawa, K., Konishi, J., Tanaka, Y., Maruhashi, K. & Kurane, R.(2001). Microbial desulfurization of alkylated dibenzothiophene and alkylated benzothiophene by recombinant Rhodococcus sp. strain T09. Appl Microbiol Biotechnol 56, 196–200.[CrossRef] [Google Scholar]
14. Saint-Fort, R.(2006). Sulfolane attenuation by surface and subsurface soil matrices. J Environ Sci Health A Tox Hazard Subst Environ Eng 41, 1211–1231.[CrossRef] [Google Scholar]
15. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
16. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
17. Thompson, J. D., Higgins, D. G. & Gibson, T. J.(1994).clustalw: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[CrossRef] [Google Scholar]