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Volume 65, Issue Pt_11

sp. nov., isolated from ginseng-cultivated soil Free

Abstract

A novel bacterium, designated DCY95, was isolated from ginseng-cultivated soil in Quang Nam province, Vietnam. On the basis of 16S rRNA and gene sequence analysis, this isolate was assigned to the genus and found to be closely related to SY01 (97.1 % 16S rRNA gene sequence similarity) and THMBG22 (96.4 %). The partial gene of DCY95 possessed 69.6–83.9 % sequence identity to those of other members of the genus . Strain DCY95 was Gram-reaction-negative, catalase-negative, oxidase-positive, strictly aerobic, rod-shaped and motile by means of peritrichous flagella. Ellipsoidal free spores or subterminal endospores were produced in sporangia. MK-7 was the diagnostic menaquinone. The cell-wall peptidoglycan contained -diamonopimelic acid as the diamino acid. Whole-cell sugars comprised ribose, mannose and glucose. The major cellular fatty acids were anteiso-C, iso-C and C. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminophospholipids, and two unidentified phospholipids. The genomic DNA G+C content was 60.7 ± 0.9 mol%. Phenotypic and chemotaxonomic results placed strain DCY95 within the genus . However, DNA–DNA relatedness values between strain DCY95 and KACC 14895 or NBRC 108766 were lower than 36 %. The low DNA relatedness data in combination with phylogenetic and (GTG)-PCR analyses, as well as biochemical tests, indicated that strain DCY95 could not be assigned to any recognized species. In conclusion, the results in this study support the classification of strain DCY95 as a representative of a novel species within the genus , for which the name is proposed. The type strain is DCY95 ( = KCTC 33581 = DSM 29477).

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Funding
This study was supported by the:
  • Institute of Planning and Evaluation for Technology (IPET) in Food, Agriculture, Forestry and Fisheries, Republic of Korea (Award 313038-03-2-S13020)
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2015-11-01
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Paenibacillus panaciterrae sp. nov., isolated from ginseng-cultivated soil
Int J Syst Evol Microbiol 65, 4080 (2015); https://doi.org/10.1099/ijsem.0.000540
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