- Home
- Publications
- International Journal of Systematic and Evolutionary Microbiology
- Volume 66, Issue 1
- Article

f Pyruvatibacter mobilis gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122
- Authors: Guanghua Wang1 , Mingxing Tang1 ,2 , Hualian Wu1 , Shikun Dai1 , Tao Li1 , Chenghao Chen1 ,2 , Hui He1 , Jiewei Fan1 , Wenzhou Xiang1 , Xiang Li1
-
- VIEW AFFILIATIONS
-
1 1 Key Laboratory of Tropical Marine Bio-resources and Ecology (LMB), Guangdong Key Laboratory of Marine Materia Medica (LMMM-GD), South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, PR China 2 2 University of Chinese Academy of Sciences, Beijing 100049, PR China
- Correspondence Wenzhou Xiang [email protected]
- First Published Online: 01 January 2016, International Journal of Systematic and Evolutionary Microbiology 66: 184-188, doi: 10.1099/ijsem.0.000692
- Subject: NEW TAXA - Proteobacteria
- Cover date:




Pyruvatibacter mobilis gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122, Page 1 of 1
< Previous page | Next page > /docserver/preview/fulltext/ijsem/66/1/184_ijsem000692-1.gif
-
A Gram-stain-negative, aerobic bacterium, designated strain GYP-11T, was isolated from the culture broth of a marine microalga, Picochloruma sp. 122. Cells were dimorphic rods; free living cells were motile by means of a single polar flagellum, and star-shaped-aggregate-forming cells were attached with stalks and non-motile. Sodium pyruvate or Tween 20 was required for growth on marine agar 2216.16S rRNA gene sequence analysis revealed that this isolate shared 94.07 % similarity with its closest type strain, Parvibaculum hydrocarboniclasticum EPR92T. Phylogenetic analyses indicated that strain GYP-11T represents a distinct lineage in a robust clade consisting of strain GYP-11T, alphaproteobacterium GMD21A06 and Candidatus Phaeomarinobacter ectocarpi Ec32. This clade was close to the genera Parvibaculum and Tepidicaulis in the order Rhizobiales. Chemotaxonomic and physiological characteristics, including cellular fatty acids and carbon source profiles, also readily distinguished strain GYP-11T from all established genera and species. Thus, it is concluded that strain GYP-11T represents a novel species of a new genus in the order Rhizobiales, for which the name Pyruvatibacter mobilis gen. nov., sp. nov. is proposed. The type strain of Pyruvatibacter mobilis is GYP-11T ( = CGMCC 1.15125T = KCTC 42509T).
-
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Pyruvatibacter mobilis GYP-11T is KR078282.
-
One supplementary table and four supplementary figures are available with the online Supplementary Material.
© 2015 IUMS | Published by the Microbiology Society
-
Alain K. , Querellou J. . ( 2009;). Cultivating the uncultured: limits, advances and future challenges. Extremophiles 13: 583––594 [CrossRef] [PubMed].
-
Arun A. B. , Chen W. M. , Lai W. A. , Chou J. H. , Rekha P. D. , Shen F. T. , Singh S. , Young C. C. . ( 2009;). Parvularcula lutaonensis sp. nov., a moderately thermotolerant marine bacterium isolated from a coastal hot spring. Int J Syst Evol Microbiol 59: 998––1001 [CrossRef] [PubMed].
-
Bernardet J.-F. , Nakagawa Y. , Holmes B. , Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes . ( 2002;). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52: 1049––1070 [PubMed].
-
Cho J. C. , Giovannoni S. J. . ( 2003;). Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the σ-Proteobacteria . Int J Syst Evol Microbiol 53: 1031––1036 [CrossRef] [PubMed].
-
Collins M. D. . ( 1994;). Isoprenoid quinones. . In Chemical Methods in Prokaryotic Systematics, pp. 345––401. Edited by Goodfellow M. , O'Donnell A. G. . Chichester: Wiley;.
-
Dong X. Z. , Cai M. Y. . ( 2001;). Determinative Manual for Routine Bacteriology Beijing: Scientific Press;.
-
Felsenstein J. . ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368––376 [CrossRef] [PubMed].
-
Felsenstein J. . ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783––791 [CrossRef].
-
Gerhardt P. , Murray R. G. E. , Wood W. A. , Krieg N.R.(editors) . ( 1994;). Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology;.
-
Kamekura M. . ( 1993;). Lipids of extreme halophiles. . In The Biology of Halophilic Bacteria, pp. 135––161. Edited by Vreeland R. H. , Hochstein L. I. . Boca Raton: CRC Press;.
-
Kim O. S. , Cho Y. J. , Lee K. , Yoon S. H. , Kim M. , Na H. , Park S. C. , Jeon Y. S. , Lee J. H. , other authors . ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716––721 [CrossRef] [PubMed].
-
Kimura M. . ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111––120 [CrossRef] [PubMed].
-
Komagata K. , Suzuki K. . ( 1987;). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19: 161––207 [CrossRef].
-
Lai Q. , Wang L. , Liu Y. , Yuan J. , Sun F. , Shao Z. . ( 2011;). Parvibaculum indicum sp. nov., isolated from deep-sea water. Int J Syst Evol Microbiol 61: 271––274 [CrossRef] [PubMed].
-
Li S. , Tang K. , Liu K. , Yu C. P. , Jiao N. . ( 2014;). Parvularcula oceani [corrected] sp. nov., isolated from deep-sea water of the Southeastern Pacific Ocean. Antonie van Leeuwenhoek 105: 245––251 [CrossRef] [PubMed].
-
Mesbah M. , Premachandran U. , Whitman W. B. . ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39: 159––167 [CrossRef].
-
Pruesse E. , Peplies J. , Glöckner F. O. . ( 2012;). SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28: 1823––1829 [CrossRef] [PubMed].
-
Rosario-Passapera R. , Keddis R. , Wong R. , Lutz R. A. , Starovoytov V. , Vetriani C. . ( 2012;). Parvibaculum hydrocarboniclasticum sp. nov., a mesophilic, alkane-oxidizing alphaproteobacterium isolated from a deep-sea hydrothermal vent on the East Pacific Rise. Int J Syst Evol Microbiol 62: 2921––2926 [CrossRef] [PubMed].
-
Rüger H. J. , Höfle M. G. . ( 1992;). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42: 133––143 [CrossRef] [PubMed].
-
Saitou N. , Nei M. . ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406––425 [PubMed].
-
Sapp M. , Schwaderer A. S. , Wiltshire K. H. , Hoppe H. G. , Gerdts G. , Wichels A. . ( 2007;). Species-specific bacterial communities in the phycosphere of microalgae?. Microb Ecol 53: 683––699 [CrossRef] [PubMed].
-
Schleheck D. , Tindall B. J. , Rosselló-Mora R. , Cook A. M. . ( 2004;). Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate. Int J Syst Evol Microbiol 54: 1489––1497 [CrossRef] [PubMed].
-
Takeuchi M. , Yamagishi T. , Kamagata Y. , Oshima K. , Hattori M. , Katayama T. , Hanada S. , Tamaki H. , Marumo K. , other authors . ( 2015;). Tepidicaulis marinus gen. nov., sp. nov., a marine bacterium that reduces nitrate to nitrous oxide under strictly microaerobic conditions. Int J Syst Evol Microbiol 65: 1749––1754 [CrossRef].
-
Tamura K. , Peterson D. , Peterson N. , Stecher G. , Nei M. , Kumar S. . ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731––2739 [CrossRef] [PubMed].
-
Taylor J. D. , Cottingham S. D. , Billinge J. , Cunliffe M. . ( 2014;). Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters. ISME J 8: 245––248 [CrossRef] [PubMed].
-
Teeling H. , Fuchs B. M. , Becher D. , Klockow C. , Gardebrecht A. , Bennke C. M. , Kassabgy M. , Huang S. , Mann A. J. , other authors . ( 2012;). Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608––611 [CrossRef] [PubMed].
-
Tindall B. J. . ( 1990;). Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66: 199––202.[CrossRef]
-
Tindall B. J. , Sikorski J. , Smibert R. M. , Krieg N. R. . ( 2007;). Phenotypic characterization and the principles of comparative systematics. . In Methods for General and Molecular Microbiology, pp. 330––393. Edited by Reddy C. A. , Beveridge T. J. , Breznak J. A. , Marzluf G. , Schmidt T. M. , Snyder L. R. . Washington, DC: American Society for Microbiology;.
-
Yarza P. , Yilmaz P. , Pruesse E. , Glöckner F. O. , Ludwig W. , Schleifer K. H. , Whitman W. B. , Euzéby J. , Amann R. , Rosselló-Móra R. . ( 2014;). Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 12: 635––645 [CrossRef] [PubMed].
-
Yu Z. , Lai Q. , Li G. , Shao Z. . ( 2013;). Parvularcula dongshanensis sp. nov., isolated from soft coral. Int J Syst Evol Microbiol 63: 2114––2117 [CrossRef] [PubMed].

Supplementary Data
Data loading....

Article metrics loading...

Full text loading...
Author and Article Information
-
This Journal
/content/journal/ijsem/10.1099/ijsem.0.000692dcterms_title,dcterms_subject,pub_serialTitlepub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
Other Society Journals
/content/journal/ijsem/10.1099/ijsem.0.000692dcterms_title,dcterms_subject-pub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
PubMed
-
Google Scholar
Figure data loading....