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- Volume 66 Number 2
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f Brevibacillus sediminis sp. nov., isolated from a hot spring
- Authors: Wen-Dong Xian1,† , Yi-Rui Yin1,† , Lan Liu2 , Chang-Guo Yuan1 , Firasat Hussain1 , Inamullah Khan1 , Neeli Habib1 , En-Min Zhou1,2 , Wen-Jun Li1,2
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- VIEW AFFILIATIONS
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1 1Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, PRChina 2 2State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, College of Ecology and Evolution, Sun Yat-Sen University, Guangzhou 510275, PRChina
- Correspondence Wen-Jun Li [email protected] or [email protected]
- First Published Online: 01 February 2016, International Journal of Systematic and Evolutionary Microbiology 66: 548-553, doi: 10.1099/ijsem.0.000752
- Subject: NEW TAXA - Firmicutes and related organisms
- Cover date:




Brevibacillus sediminis sp. nov., isolated from a hot spring, Page 1 of 1
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Strain YIM 78300T, a novel Gram-stain-positive, moderately thermophilic, endospore-forming, rod-shaped, motile bacterium, was recovered from the sediment of a hot spring in the Tagejia Geothermal Field, Angren, Tibet province, western China. Optimum growth was observed at 50–55 °C, at pH 7.0 and with 0–1.5 % (w/v) NaCl. Phylogenetic analysis of the 16S rRNA gene sequence of strain YIM 78300T indicated that it belongs to the genus Brevibacillus. Similarity levels between the 16S rRNA gene sequences of the new isolate and those of the type strains of Brevibacillus members were 96.9–96.3 %; highest sequence similarity was with Brevibacillus thermoruber DSM 7064T. The predominant menaquinone was MK-7 and the major cellular fatty acids were iso-C15 : 0 and iso-C17 : 0. The major polar lipids were phosphatidyl-N-methylethanolamine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified phospholipids, an unidentified aminophospholipid and two unidentified polar lipids. The G+C content of the genomic DNA of strain YIM 78300T was 57.9 mol%. Based on phylogenetic analyses, and physiological and biochemical characteristics, strain YIM 78300T is considered to represent a novel species of the genus Brevibacillus, for which the name Brevibacillus sediminis sp. nov. is proposed. The type strain is YIM 78300T ( = DSM 29928T = CPCC 100738T).
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†
These authors contributed equally to this work.
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The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain YIM 78300T is KP985221.
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One supplementary table and four supplementary figures are available with the online Supplementary Material.
© 2015 IUMS | Published by the Microbiology Society
-
Cerny G.. ( 1978;). Studies on the aminopeptidase test for the distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5: 113––122 [CrossRef].
-
Collins M., Jones D.. ( 1980;). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Bacteriol 48: 459––470.
-
Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E.. ( 1977;). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100: 221––230 [CrossRef] [PubMed].
-
Felsenstein J.. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368––376 [CrossRef] [PubMed].
-
Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783––791 [CrossRef].
-
Fitch W. M.. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406––416 [CrossRef].
-
Gonzalez C., Gutierrez C., Ramirez C.. ( 1978;). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24: 710––715 [CrossRef] [PubMed].
-
Kelly ( 1964;). Inter-Society Color Council – National Bureau of Standards Color Name Charts Illustrated with Centroid Colors Washington, DC: US Government Printing Office;.
-
Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H., other authors. ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716––721 [CrossRef] [PubMed].
-
Kimura M.. ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111––120 [CrossRef] [PubMed].
-
Kovacs N.. ( 1956;). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178: 703 [CrossRef] [PubMed].
-
Kroppenstedt R. M.. ( 1982;). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chiomatogr 5: 2359––2367 [CrossRef].
-
Li W. J., Xu P., Schumann P., Zhang Y. Q., Pukall R., Xu L. H., Stackebrandt E., Jiang C. L.. ( 2007;). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57: 1424––1428 [CrossRef] [PubMed].
-
Logan N. A., De Vos P.. ( 2009;). Genus IV. Brevibacillus Shida, Takagi, Kadowaki and Komagata 1996a, 942VP. . In Bergey's Manual of Systematic Bacteriology, 2nd edn.., vol. 3, pp. 304––316. Edited by DeVos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K. H., Whitman W. B.. New York: Springer;.
-
Manachini P., Fortina M., Parini C., Craveri R.. ( 1985;). Bacillus thermoruber sp. nov., nom. rev., a red-pigmented thermophilic bacterium. Int J Syst Bacteriol 35: 493––496 [CrossRef].
-
Mergaert J., Cnockaert M. C., Swings J.. ( 2002;). Fulvimonas soli gen. nov., sp. nov., a gamma-proteobacterium isolated from soil after enrichment on acetylated starch plastic. Int J Syst Evol Microbiol 52: 1285––1289 [PubMed].
-
Mesbah M., Premachandran U., Whitman W. B.. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39: 159––167 [CrossRef].
-
Minnikin D., Collins M., Goodfellow M.. ( 1979;). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47: 87––95 [CrossRef].
-
Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406––425 [PubMed].
-
Sasser M.. ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;.
-
Shida O., Takagi H., Kadowaki K., Komagata K.. ( 1996;). Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Bacteriol 46: 939––946 [CrossRef] [PubMed].
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S.. ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731––2739 [CrossRef] [PubMed].
-
Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G.. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876––4882 [CrossRef] [PubMed].
-
Waksman S. A.. ( 1967;). The Actinomycetes: A Summary of Current Knowledge New York: The Ronald Press Co;.
-
Xu P., Li W. J., Tang S. K., Zhang Y. Q., Chen G. Z., Chen H. H., Xu L. H., Jiang C. L.. ( 2005;). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family ‘Oxalobacteraceae’ isolated from China. Int J Syst Evol Microbiol 55: 1149––1153 [CrossRef] [PubMed].

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