- Home
- Publications
- International Journal of Systematic and Evolutionary Microbiology
- Volume 66, Issue 3
- Article

f Roseomonas arctica sp. nov., isolated from arctic glacial foreland soil
- Authors: Xia Qiu1 , Zhihao Qu1 , Fan Jiang1 , Yingjun Lin1 , Yumin Zhang1 , Xulu Chang1 , Xuyang Da1 , Sangsang Deng1 , Myongchol Kim1,3 , Chengxiang Fang1 , Fang Peng1,2
-
- VIEW AFFILIATIONS
-
1 1China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PRChina 2 2Innovation Center of Industrial Fermentation, Wuhan 430072, PRChina 3 3College of Life Sciences, Kim I1 Sung University, Pyongyang, DPR of Korea
- Correspondence Fang Peng [email protected]
- First Published Online: 01 March 2016, International Journal of Systematic and Evolutionary Microbiology 66: 1218-1223, doi: 10.1099/ijsem.0.000857
- Subject: NEW TAXA - Proteobacteria
- Cover date:




Roseomonas arctica sp. nov., isolated from arctic glacial foreland soil, Page 1 of 1
< Previous page | Next page > /docserver/preview/fulltext/ijsem/66/3/1218_ijsem000857-1.gif
-
A novel psychrotolerant bacterium, designed strain M6-79T, was isolated from an arctic glacial foreland soil sample collected from Ny-Ålesund in the Svalbard Archipelago, Norway. Cells of strain M6-79T were Gram-stain-negative, rod-shaped and produced a red-pigment. Strain M6-79T was strictly aerobic, non-motile, non-endospore-forming, oxidase-negative and catalase-positive. Based on 16S rRNA gene sequence analysis, strain M6-79T was phylogenetically related to Roseomonas aquatica TR53T (95.2 % 16S rRNA gene sequence similarity), Roseomonas lacus TH-G33T (94.3 %), ‘Roseomonas sediminicola’ FW-3 (94.3 %), Roseomonas terrae DS-48T (94.1 %) and Roseomonas soli 5N26T (94.1 %). The unique isoprenoid quinone detected in strain M6-79T was Q-9. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, one unknown aminolipid and one unknown lipid. Strain M6-79T possessed C18 : 1ω7c, C16 : 0 and summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) as the predominant fatty acids, and the DNA G+C content was 71.2 mol%. Combined data from phylogenetic, phenotypic and chemotaxonomic studies revealed that strain M6-79T represents a novel species of the genus Roseomonas, for which the name Roseomonas arctica sp. nov. is proposed. The type strain is strain M6-79T ( = CCTCC AB 2013101T = LMG 28251T).
-
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain M6-79T is KJ647399.
-
A supplementary table and a supplementary figure are available with the online Supplementary Material.
© 2015 IUMS | Published by the Microbiology Society
-
Bauer A. W., Kirby W. M. M., Sherris J. C., Turck M.. ( 1966;). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45: 493––496 [PubMed].
-
Bibashi E., Sofianou D., Kontopoulou K., Mitsopoulos E., Kokolina E.. ( 2000;). Peritonitis due to Roseomonas fauriae in a patient undergoing continuous ambulatory peritoneal dialysis. J Clin Microbiol 38: 456––457 [PubMed].
-
Busse H.-J., Auling G.. ( 1988;). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11: 1––8 [CrossRef].
-
Busse H.-J., Bunka S., Hensel A., Lubitz W.. ( 1997;). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47: 698––708 [CrossRef].
-
Doetsch R. N.. ( 1981;). Determinative methods of light microscopy. . In Manual of Methods for General Bacteriology, pp. 21––33. Edited by Gerhardt P., Murray R. G. E., Costilow R. N., Nester E. W., Wood W. A., Krieg N. R., Phillips G. H.. Washington, DC: American Society for Microbiology;.
-
Felsenstein J.. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368––376 [CrossRef] [PubMed].
-
Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783––791 [CrossRef].
-
Fitch W. M.. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406––416 [CrossRef].
-
Gallego V., Sánchez-Porro C., García M. T., Ventosa A.. ( 2006;). Roseomonas aquatica sp. nov., isolated from drinking water. Int J Syst Evol Microbiol 56: 2291––2295 [CrossRef] [PubMed].
-
He D., Kim J. K., Jiang X. Y., Park H. Y., Sun C., Yu H. S., Yoon M. H., Kim S. C., Jin F. X., Im W. T.. ( 2014;). Roseomonas sediminicola sp. nov., isolated from fresh water. Antonie van Leeuwenhoek 105: 191––197 [CrossRef] [PubMed].
-
Jiang C. Y., Dai X., Wang B. J., Zhou Y. G., Liu S. J.. ( 2006;). Roseomonas lacus sp. nov., isolated from freshwater lake sediment. Int J Syst Evol Microbiol 56: 25––28 [CrossRef] [PubMed].
-
Kim D. U., Ka J. O.. ( 2014;). Roseomonas soli sp. nov., isolated from an agricultural soil cultivated with Chinese cabbage (Brassica campestris). Int J Syst Evol Microbiol 64: 1024––1029 [CrossRef] [PubMed].
-
Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H., other authors. ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716––721 [CrossRef] [PubMed].
-
Kim S. J., Weon H. Y., Ahn J. H., Hong S. B., Seok S. J., Whang K. S., Kwon S. W.. ( 2013;). Roseomonas aerophila sp. nov., isolated from air. Int J Syst Evol Microbiol 63: 2334––2337 [CrossRef] [PubMed].
-
Kimura M.. ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111––120 [CrossRef] [PubMed].
-
Lopes A., Espirito Santo C., Grass G., Chung A. P., Morais P. V.. ( 2011;). Roseomonas pecuniae sp. nov., isolated from the surface of a copper-alloy coin. Int J Syst Evol Microbiol 61: 610––615 [CrossRef] [PubMed].
-
Mesbah M., Premachandran U., Whitman W. B.. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39: 159––167 [CrossRef].
-
Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E.. ( 1996;). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46: 1088––1092 [CrossRef] [PubMed].
-
Rihs J. D., Brenner D. J., Weaver R. E., Steigerwalt A. G., Hollis D. G., Yu V. L.. ( 1993;). Roseomonas, a new genus associated with bacteremia and other human infections. J Clin Microbiol 31: 3275––3283 [PubMed].
-
Rihs J. D., Brenner D. J., Weaver R. E., Steigerwalt A. G., Hollis D. G., Yu V. L.. ( 1993;). Roseomonas gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List 65. Int J Syst Bacteriol 48: 627.
-
Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406––425 [PubMed].
-
Sánchez-Porro C., Gallego V., Busse H. J., Kämpfer P., Ventosa A.. ( 2009;). Transfer of Teichococcus ludipueritiae and Muricoccus roseus to the genus Roseomonas, as Roseomonas ludipueritiae comb. nov. and Roseomonas rosea comb. nov., respectively, and emended description of the genus Roseomonas. Int J Syst Evol Microbiol 59: 1193––1198 [CrossRef] [PubMed].
-
Sandoe J. A., Malnick H., Loudon K. W.. ( 1997;). A case of peritonitis caused by Roseomonas gilardii in a patient undergoing continuous ambulatory peritoneal dialysis. J Clin Microbiol 35: 2150––2152 [PubMed].
-
Sasser M.. ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;.
-
Smibert R. M., Krieg N. R.. ( 1994;). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607––654. Edited by Gerhardt P., Murray R. G. E., Woods W. A., Krieg N. R.. Washington, DC: American Society for Microbiology;.
-
Subudhi C. P., Adedeji A., Kaufmann M. E., Lucas G. S., Kerr J. R.. ( 2001;). Fatal Roseomonas gilardii bacteremia in a patient with refractory blast crisis of chronic myeloid leukemia. Clin Microbiol Infect 7: 573––575 [CrossRef] [PubMed].
-
Tamura K., Stecher G., Peterson D., Filipski A., Kumar S.. ( 2013;). mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725––2729 [CrossRef] [PubMed].
-
Thompson J. D., Higgins D. G., Gibson T. J.. ( 1994;). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673––4680 [CrossRef] [PubMed].
-
Tindall B. J.. ( 1990;). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66: 199––202 [CrossRef].
-
Venkata Ramana V., Sasikala Ch., Takaichi S., Ramana Ch. V.. ( 2010;). Roseomonas aestuarii sp. nov., a bacteriochlorophyll-a containing alphaproteobacterium isolated from an estuarine habitat of India. Syst Appl Microbiol 33: 198––203 [CrossRef] [PubMed].
-
Xie C. H., Yokota A.. ( 2003;). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49: 345––349 [CrossRef] [PubMed].
-
Yoo S. H., Weon H. Y., Noh H. J., Hong S. B., Lee C. M., Kim B. Y., Kwon S. W., Go S. J.. ( 2008;). Roseomonas aerilata sp. nov., isolated from an air sample. Int J Syst Evol Microbiol 58: 1482––1485 [CrossRef] [PubMed].
-
Yoon J. H., Kang S. J., Oh H. W., Oh T. K.. ( 2007;). Roseomonas terrae sp. nov. Int J Syst Evol Microbiol 57: 2485––2488 [CrossRef] [PubMed].

Supplementary Data
Data loading....

Article metrics loading...

Full text loading...
Author and Article Information
-
This Journal
/content/journal/ijsem/10.1099/ijsem.0.000857dcterms_title,dcterms_subject,pub_serialTitlepub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
Other Society Journals
/content/journal/ijsem/10.1099/ijsem.0.000857dcterms_title,dcterms_subject-pub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
PubMed
-
Google Scholar
Figure data loading....