1887

Abstract

A mesophilic anaerobic bacterium, designated KHALHBd91 was isolated from the moderately hot spring of Hammam Biadha, Tunisia. The strain was Gram-staining-negative, non-sporulating, non-motile and rod-shaped, appearing singly (0.5–2.0×0.5–1 µm). It grew anaerobically at temperatures between 20 and 50 °C (optimum 37 °C) and at pH values between 5.5 and 7.8 (optimum 7.0). It required NaCl for growth, with growth observed at up 8.5 % and an optimum at 2.5 %. KHALHBd91 used glucose, galactose, maltose, pyruvate, lactate, fumarate and yeast extract as electron donors. The end-products from glucose fermentation were acetate, propionate, succinate and CO. Nitrate, nitrite, thiosulfate, elemental sulfur, sulfate and sulfite were not used as terminal electron acceptors. The predominant cellular fatty acids were anteiso-C and iso-C. The respiratory quinone was MK-6. The main polar lipids consisted of lipids, phospholipids, glycolipids, aminolipids, phosphoaminoglycolipids and phosphatidylethanolamine. The DNA G+C content was 35.0 mol%. Phylogenetic analysis of the small-subunit ribosomal 16S rRNA gene sequence indicated that KHALHBd91 had and (phylum , class , order ) as its closest relatives (similarity of 86.7 and 87.8 % respectively). The phylogenetic and physiological data fro the present study strongly indicate that the isolate represents a novel genus and species of a novel family, gen. nov., sp. nov., in the family fam. nov. The type strain is KHALHBd91 (=DSM28579=JCM19909).

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2016-11-01
2024-04-19
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References

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. 1990; Basic local alignment search tool. J Mol Biol 215:403–410 [View Article][PubMed]
    [Google Scholar]
  2. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Annal Biochem 81:461–466 [View Article]
    [Google Scholar]
  3. Cord-Ruwisch R. 1985; A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacterial. J Microbiol Methods 4:33–36 [View Article]
    [Google Scholar]
  4. Edgar R. C. 2004; muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797 [View Article][PubMed]
    [Google Scholar]
  5. Fardeau M. L., Ollivier B., Patel B. K., Magot M., Thomas P., Rimbault A., Rocchiccioli F., Garcia J. L. 1997; Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 47:1013–1019 [View Article][PubMed]
    [Google Scholar]
  6. Hamdi O., Ben Hania W., Postec A., Bouallagui H., Hamdi M., Bonin P., Ollivier B., Fardeau M. L. 2015; Aminobacterium thunnarium sp. nov., a mesophilic, amino acid-degrading bacterium isolated from an anaerobic sludge digester, pertaining to the phylum Synergistetes. Int Syst Evol Microbiol 65:609–614 [View Article]
    [Google Scholar]
  7. Huang X.-F., Liu Y. J., Dong J.-D., Qu L.-Y., Zhang Y.-Y., Wang F.-Z., Tian X.-P., Zhang S. 2014; Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov. Int Syst Evol Microbiol 64:875–881 [View Article]
    [Google Scholar]
  8. Hungate R. E. 1969; A roll tube method for cultivation of strict anaerobes. In Methods in Microbiology vol. 3B , pp. 117–132 Edited by Norris J. R., Ribbons D. W. New York: Academic Press;
    [Google Scholar]
  9. Iino T., Mori K., Itoh T., Kudo T., Suzuki K.-I., Ohkuma M. 2014; Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov. Int Syst Evol Microbiol 64:3660–3667 [View Article]
    [Google Scholar]
  10. Khelifi N., Ben Romdhane E., Hedi A., Postec A., Fardeau M. L., Hamdi M., Tholozan J. L., Ollivier B., Hirschler-Réa A. 2010; Characterization of Microaerobacter geothermalis gen. nov., sp. nov., a novel microaerophilic, nitrate- and nitrite-reducing thermophilic bacterium isolated from a terrestrial hot spring in Tunisia. Extremophiles 14:297–304 [View Article][PubMed]
    [Google Scholar]
  11. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [View Article][PubMed]
    [Google Scholar]
  12. Krieg N. R., Ludwig W., Whitman W. B., Hedlund B. P., Paster B. J., Staley J. T., Ward N., Brown D., Parte A. 2011 [1984 (Williams & Wilkins)] The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. In Bergey's Manual of Systematic Bacteriology, 2nd edn. , p. 908 Edited by Garrity G. M. New York: Springer;
    [Google Scholar]
  13. Kuykendall L. D., Roy M. A., O´Neil J. J., Devine T. E. 1988; Fatty acids, antibiotic resistance, and desoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38:358–361 [View Article]
    [Google Scholar]
  14. Ludwig W., Euzéby J., Whitman W. B., Nakagawa Y. 2011; Road map of phylum Bacteroidetes and Family II. Marinilabiliaceae fam. nov. In Bergey’s Manual of Systematic Bacteriology, 2 edn. vol. 4 , pp. 49–54 Edited by Krieg N. R., Staley J. T., Brown D. R., Hedlund B. P., Paster B. J., Ward N. L., Ludwig W., Whitman W. B. New York: Springer;
    [Google Scholar]
  15. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [View Article]
    [Google Scholar]
  16. Miller L. T. 1982; Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16:584–586[PubMed]
    [Google Scholar]
  17. Na H., Kim S., Moon E. Y., Chun J. 2009; Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment. Int Syst Evol Microbiol 59:2241–2246 [View Article]
    [Google Scholar]
  18. Ruvira M. A., Lucena T., Pujalte M. J., Arahal D. R., Macián M. C. 2013; Marinifilum flexuosum sp. nov., a new Bacteroidetes isolated from coastal Mediterranean sea water and emended description of the genus Marinifilum Na et al., 2009. Syst Appl Microbiol 36:155–159 [View Article][PubMed]
    [Google Scholar]
  19. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  20. Widdel F., Pfennig N. 1981; Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. I. Isolation of new sulfate-reducing bacteria enriched with acetate from saline environments. Description of Desulfobacter postgatei gen. nov., sp. nov. Arch Microbiol 129:395–400[PubMed] [CrossRef]
    [Google Scholar]
  21. Yang S.-H., Seo H.-S., Woo J.-H., Oh H.-M., Jang H., Lee J.-H., Kim S.-J., Kwon K. K. 2014; Carboxylicivirga gen. nov. in the family Marinilabiliaceae with two novel species, Carboxylicivirga mesophila sp. nov. and Carboxylicivirga taeanensis sp. nov., and reclassification of Cytophaga fermentans as Saccharicrinis fermentans gen. nov., comb. nov. Int Syst Evol Microbiol 64:1351–1358 [CrossRef]
    [Google Scholar]
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