1887

Abstract

A thermophilic, anaerobic, heterotrophic bacterium, designated 2PyrY55-1, was isolated from the wall of an active hydrothermal white-smoker chimney in the Soria Moria vent field (71° N) at the Mohns Ridge in the Norwegian–Greenland Sea. Cells of the strain were Gram-negative, motile rods that possessed a polar flagellum and a sheath-like outer structure (‘toga’). Growth was observed at 45–70 °C (optimum 65 °C), at pH 5.0–7.5 (optimum pH 5.5) and in 1.5–5.5 % (w/v) NaCl (optimum 2.5 %). The strain grew on pyruvate, complex proteinaceous substrates and various sugars. Cystine and elemental sulfur were used as electron acceptors, and sulfide was then produced. The G+C content of the genomic DNA was 27 mol% ( method). Cellular fatty acids included C, C, C 7 and/or iso-C 2-OH, C 9, C 9, C, C 7 and C. Phylogenetic analyses of the 16S rRNA gene showed that the strain belonged to the genus in the family . Based on the phylogenetic and chemotaxonomic data, strain 2PyrY55-1 (=DSM 29778=JCM 30566) is the type strain of a novel species of the genus , for which the name sp. nov. is proposed.

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2016-12-01
2024-04-19
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References

  1. Alain K., Marteinsson V. T., Miroshnichenko M. L., Bonch-Osmolovskaya E. A., Prieur D., Birrien J. L. 2002; Marinitoga piezophila sp. nov., a rod-shaped, thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1331–1339 [View Article][PubMed]
    [Google Scholar]
  2. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J. H., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [View Article][PubMed]
    [Google Scholar]
  3. Balch W. E., Fox G. E., Magrum L. J., Woese C. R., Wolfe R. S. 1979; Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296[PubMed]
    [Google Scholar]
  4. Benson D. A., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman D. J., Ostell J., Sayers E. W. 2013; GenBank. Nucleic Acids Res 41:D36–D42 [View Article][PubMed]
    [Google Scholar]
  5. Bhandari V., Gupta R. S. 2014a; Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations. Antonie van Leeuwenhoek 105:143–168 [CrossRef]
    [Google Scholar]
  6. Bhandari V., Gupta R. S. 2014b; The phylum Thermotogae. In The Prokaryotes – Other Major Lineages of Bacteria and the Archaea, 4th., edn. pp. 989–1015 Edited by Rosenberg E., DeLong E. F., Lory S., Stackebrandt E., Thompson F. Berlin Heidelberg: Springer Verlag;
    [Google Scholar]
  7. Cord-Ruwisch R. 1985; A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4:33–36 [View Article]
    [Google Scholar]
  8. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
    [Google Scholar]
  9. Itoh T., Onishi M., Kudo T., Takashina T., Kato S., Sakamoto M., Ohkuma M., Iino T. 2016; Athalassotoga saccharophila gen. nov., sp. nov., isolated from an acidic terrestrial hot spring, and proposal of Mesoaciditogales ord. nov. and Mesoaciditogaceae fam. nov. in the phylum Thermotogae. Int J Syst Evol Microbiol 66:1045–1051 [View Article]
    [Google Scholar]
  10. Jackson C. R., Langner H. W., Donahoe-Christiansen J., Inskeep W. P., McDermott T. R. 2001; Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring. Environ Microbiol 3:532–542 [View Article][PubMed]
    [Google Scholar]
  11. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. et al. 2012; Introducing EzTaxon: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721 [View Article][PubMed]
    [Google Scholar]
  12. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar B. A., Lai T., Steppi S. et al. 2004; ARB: a software environment for sequence data. Nucleic Acids Res 32:1363–1371 [View Article][PubMed]
    [Google Scholar]
  13. Mandel M., Igambi L., Bergendahl J., Dodson M. L., Scheltgen E. 1970; Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid. J Bacteriol 101:333–338[PubMed]
    [Google Scholar]
  14. Marmur J. 1963; A procedure for the isolation of deoxyribonucleic acid from microorganisms. In Methods in Enzymology pp. 726–728 Edited by Colowick S. P., Kaplan N. O. New York: Academic Press;
    [Google Scholar]
  15. Myers E. W., Miller W. 1988; Optimal alignments in linear space. Comput Appl Biosci 4:11–17 [View Article][PubMed]
    [Google Scholar]
  16. Nunoura T., Oida H., Miyazaki M., Suzuki Y., Takai K., Horikoshi K. 2007; Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough. Int J Syst Evol Microbiol 57:467–471 [View Article][PubMed]
    [Google Scholar]
  17. Oren A., Garrity G. M. 2014; List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 64:1455–1458 [View Article]
    [Google Scholar]
  18. Pedersen R. B., Thorseth I. H., Nygaard T. E., Lilley M., Kelley D. 2010; Hydrothermal activity at the Arctic Mid-Ocean Ridge. In Diversity of Hydrothermal Systems on Slow-Spreading Ocean Ridges, Geophysical Monograph vol. 188 pp. 67–89 Edited by Rona P., Devey C., Dyment J., Murton B. Washington, DC: American Geophysical Union; [CrossRef]
    [Google Scholar]
  19. Postec A., Le Breton C., Fardeau M. L., Lesongeur F., Pignet P., Querellou J., Ollivier B., Godfroy A. 2005; Marinitoga hydrogenitolerans sp. nov., a novel member of the order Thermotogales isolated from a black smoker chimney on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55:1271–1221 [View Article][PubMed]
    [Google Scholar]
  20. Postec A., Ciobanu M., Birrien J. L., Bienvenu N., Prieur D., Le Romancer M. 2010; Marinitoga litoralis sp. nov., a thermophilic, heterotrophic bacterium isolated from a coastal thermal spring on Ile Saint-Paul, Southern Indian Ocean. Int J Syst Evol Microbiol 60:1778–1782 [View Article][PubMed]
    [Google Scholar]
  21. Pruesse E., Peplies J., Glöckner F. O. 2012; SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823–1829 [View Article][PubMed]
    [Google Scholar]
  22. Quast C., Pruesse E., Yilmaz P., Gerken J., Schweer T., Yarza P., Peplies J., Glöckner F. O. 2013; The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:D590–D596 [View Article][PubMed]
    [Google Scholar]
  23. Ryu E. 1938; On the gram-differentiation of bacteria by the simplest method. J Jpn Soc Vet Sci 17:31 [View Article]
    [Google Scholar]
  24. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  25. Schleifer K. H. 2009; Classification of Bacteria and Archaea: past, present and future. Syst Appl Microbiol 32:533–542 [View Article][PubMed]
    [Google Scholar]
  26. Steinsbu B. O., Thorseth I. H., Nakagawa S., Inagaki F., Lever M. A., Engelen B., Øvreås L., Pedersen R. B. 2010; Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids. Int J Syst Evol Microbiol 60:2745–2752 [View Article][PubMed]
    [Google Scholar]
  27. Steinsbu B. O., Tindall B. J., Torsvik V. L., Thorseth I. H., Daae F. L., Pedersen R. B. 2011; Rhabdothermus arcticus gen. nov., sp. nov., a member of the family Thermaceae isolated from a hydrothermal vent chimney in the soria moria vent field on the Arctic Mid-Ocean Ridge. Int J Syst Evol Microbiol 61:2197–2204 [View Article][PubMed]
    [Google Scholar]
  28. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  29. Wery N., Lesongeur F., Pignet P., Derennes V., Cambon-Bonavita M. A., Godfroy A., Barbier G. 2001; Marinitoga camini gen. nov., sp. nov., a rod-shaped bacterium belonging to the order Thermotogales, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51:495–504 [View Article][PubMed]
    [Google Scholar]
  30. Widdel F., Bak F. 1992; Gram-negative mesophilic sulfate-reducing bacteria. In The Prokaryotes, 2nd edn. pp. 3352–3378 Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K.-H. New York: Springer; [CrossRef]
    [Google Scholar]
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