1887

Abstract

Two Gram-stain-negative, aerobic, motile, halophilic, rod-shaped bacteria, designated Hb8 and Hb20, were isolated from a tidal flat environment located on the South-West Korean peninsula. The isolates grew at 10–37 °C, at pH 5.0–9.0 and in NaCl concentrations of 0.5–15 % (w/v; optimum, 3.0–6.0 %). Sequence analysis of the 16S rRNA indicated that the isolates belong to the genus and are most closely related to R65 (98.3 %), followed by SM19, SD-14B and A3d10. The overall 16S rRNA gene sequence similarity with these species was 97.9 %, but Hb8 and Hb20 showed 100 % sequence similarity with each other. DNA–DNA relatedness values of H8 and Hb20 suggested that these isolates represent a single species, while DNA–DNA relatedness values of the two novel isolates with DSM 27079 and DSM 15400 were only 21.3 and 22.9 %, respectively. The major fatty acids present in strain Hb8 were identified as C, Cω, Cω, C 3-OH and summed feature 3 (Cω and/or Cω). Ubiquinone-9 was the main respiratory quinone in both the novel strains. The polar lipids found to be present included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, four unidentified phospholipids and five unidentified lipids. The genomic DNA G+C content of Hb8 and Hb20 was 54.5 mol%. Polyphasic analysis indicated that the two isolates are representatives of a novel species of the genus , for which the name sp. nov. is proposed. The type strain is Hb8 (=KCTC 52255=JCM 31416).

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2017-02-01
2024-04-19
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References

  1. Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M et al. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int J Syst Bacteriol 1992; 42:568–576 [View Article][PubMed]
    [Google Scholar]
  2. Shivaji S, Gupta P, Chaturvedi P, Suresh K, Delille D. Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 2005; 55:1453–1456 [View Article][PubMed]
    [Google Scholar]
  3. Yoon JH, Yeo SH, Kim IG, Oh TK. Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 2004; 54:1799–1803 [View Article][PubMed]
    [Google Scholar]
  4. Kim BY, Weon HY, Yoo SH, Kim JS, Kwon SW et al. Marinobacter koreensis sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 2006; 56:2653–2656 [View Article][PubMed]
    [Google Scholar]
  5. Gorshkova NM, Ivanova EP, Sergeev AF, Zhukova NV, Alexeeva Y et al. Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int J Syst Evol Microbiol 2003; 53:2073–2078 [View Article][PubMed]
    [Google Scholar]
  6. Antunes A, França L, Rainey FA, Huber R, Nobre MF et al. Marinobacter salsuginis sp. nov., isolated from the brine-seawater interface of the Shaban Deep, Red Sea. Int J Syst Evol Microbiol 2007; 57:1035–1040 [View Article][PubMed]
    [Google Scholar]
  7. Martín S, Márquez MC, Sánchez-Porro C, Mellado E, Arahal DR et al. Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity. Int J Syst Evol Microbiol 2003; 53:1383–1387 [View Article][PubMed]
    [Google Scholar]
  8. Liebgott PP, Casalot L, Paillard S, Lorquin J, Labat M. Marinobacter vinifirmus sp. nov., a moderately halophilic bacterium isolated from a wine-barrel-decalcification wastewater. Int J Syst Evol Microbiol 2006; 56:2511–2516 [View Article][PubMed]
    [Google Scholar]
  9. Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJ. Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates. Int J Syst Evol Microbiol 2006; 56:523–527 [View Article][PubMed]
    [Google Scholar]
  10. Huu NB, Denner EB, Ha DT, Wanner G, Stan-Lotter H. Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol 1999; 49:367–375 [View Article][PubMed]
    [Google Scholar]
  11. Márquez MC, Ventosa A. Marinobacter hydrocarbonoclasticus Gauthier, et al. 1992 and Marinobacter aquaeolei Nguyen, et al. 1999 are heterotypic synonyms. Int J Syst Evol Microbiol 2005; 55:1349–1351 [View Article][PubMed]
    [Google Scholar]
  12. Jurelevicius D, Alvarez VM, Marques JM, de Sousa Lima LR, Dias FA et al. Bacterial community response to petroleum hydrocarbon amendments in freshwater, marine, and hypersaline water-containing microcosms. Appl Environ Microbiol 2013; 79:5927–5935 [View Article][PubMed]
    [Google Scholar]
  13. Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991; 173:697–703[PubMed] [CrossRef]
    [Google Scholar]
  14. Amouric A, Liebgott PP, Joseph M, Brochier-Armanet C, Lorquin J. Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents. Int J Syst Evol Microbiol 2014; 64:46–54 [View Article][PubMed]
    [Google Scholar]
  15. Ng HJ, López-Pérez M, Webb HK, Gomez D, Sawabe T et al. Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water. PLoS One 2014; 9:e106514 [View Article][PubMed]
    [Google Scholar]
  16. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  17. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  18. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999; 41:95–98
    [Google Scholar]
  19. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120[PubMed] [CrossRef]
    [Google Scholar]
  20. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  21. Kidd KK, Sgaramella-Zonta LA. Phylogenetic analysis: concepts and methods. Am J Hum Genet 1971; 23:235–252[PubMed]
    [Google Scholar]
  22. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
    [Google Scholar]
  23. Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV et al. Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. Int J Syst Evol Microbiol 2005; 55:143–148 [View Article][PubMed]
    [Google Scholar]
  24. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids MIDI Technical Note 101 Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  25. Komagata K, Suzuki K-I. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207 [CrossRef]
    [Google Scholar]
  26. Wang CY, Ng CC, Tzeng WS, Shyu YT. Marinobacter szutsaonensis sp. nov., isolated from a solar saltern. Int J Syst Evol Microbiol 2009; 59:2605–2609 [View Article][PubMed]
    [Google Scholar]
  27. Hiraishi A, Ueda Y, Ishihara J, Mori T. Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 1996; 42:457–469 [CrossRef]
    [Google Scholar]
  28. Shieh WY, Jean WD, Lin YT, Tseng M. Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao, Taiwan. Can J Microbiol 2003; 49:244–252 [View Article][PubMed]
    [Google Scholar]
  29. Gonzalez JM, Saiz-Jimenez C. A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 2002; 4:770–773[PubMed] [CrossRef]
    [Google Scholar]
  30. Ezaki T, Hashimoto Y, Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 1989; 39:224–229 [CrossRef]
    [Google Scholar]
  31. Smibert RM, Krieg NR. Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
    [Google Scholar]
  32. Park SJ, Pham VH, Jung MY, Kim SJ, Kim JG et al. Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment. Int J Syst Evol Microbiol 2011; 61:2045–2051 [View Article][PubMed]
    [Google Scholar]
  33. Koh HW, Hong H, Min UG, Kang MS, Kim SG et al. Rhodanobacter aciditrophus sp. nov., an acidophilic bacterium isolated from mine wastewater. Int J Syst Evol Microbiol 2015; 65:4574–4579 [View Article][PubMed]
    [Google Scholar]
  34. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:152–155
    [Google Scholar]
  35. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987; 37:463–464 [CrossRef]
    [Google Scholar]
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