1887

Abstract

A Gram-stain-negative, non-motile, aerobic and rod-shaped bacterium, designated OITF-20, was isolated from the tidal flat in Oido, an island of South Korea. The novel strain grew optimally at 25 °C, at pH 7.0–8.0 and in the presence of 1.0–2.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain OITF-20 fell within the clade comprising the type strains of species of the genus . Strain OITF-20 exhibited 16S rRNA gene sequence similarity values of 97.8, 97.6 and 97.6 % to the type strains of , and , respectively, of 94.9–96.8 % to the type strains of the other species of the genus and of less than 93.4 % to the type strains of the other recognized species. Strain OITF-20 contained MK-6 as the predominant menaquinone and iso-C 3-OH, Cω6 and iso-C as the major fatty acids. The major polar lipids of strain OITF-20 were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain OITF-20 was 31.1 mol% and its mean DNA–DNA relatedness values with the type strains of , and were 17–27 %. The differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain OITF-20 is separated from other recognized species of the genus . On the basis of the data presented, strain OITF-20 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is OITF-20 (=KCTC 52501=NBRC 112458).

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2017-03-01
2024-04-19
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References

  1. Choi DH, Cho BC. Lutibacter litoralis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int J Syst Evol Microbiol 2006; 56:771–776 [View Article][PubMed]
    [Google Scholar]
  2. Parte AC. LPSN-list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 2014; 42:D613–D616 [View Article][PubMed]
    [Google Scholar]
  3. Nedashkovskaya OI, Van Trappen S, Zhukova NV, De Vos P. Lutibacter holmesii sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Lutibacter. Int J Syst Evol Microbiol 2015; 65:3991–3996 [View Article][PubMed]
    [Google Scholar]
  4. Bauer SLM, Roalkvam I, Steen IH, Dahle H. Lutibacter profundi sp. nov., isolated from a deep-sea hydrothermal system on the Arctic mid-ocean Ridge and emended description of the genus Lutibacter. Int J Syst Evol Microbiol 2016; 66:2671–2677 [View Article]
    [Google Scholar]
  5. Park S, Kang SJ, Oh TK, Yoon JH. Lutibacter maritimus sp. nov., isolated from a tidal flat sediment. Int J Syst Evol Microbiol 2010; 60:610–614 [View Article][PubMed]
    [Google Scholar]
  6. Park S, Park J-M, Won S-M, Park D-S, Yoon J-H. Lutibacter crassostreae sp. nov., isolated from oyster. Int J Syst Evol Microbiol 2015; 65:2689–2695 [View Article][PubMed]
    [Google Scholar]
  7. Lee S-Y, Lee M-H, Oh T-K, Yoon J-H. Lutibacter aestuarii sp. nov., isolated from a tidal flat sediment, and emended description of the genus Lutibacter Choi and Cho 2006. Int J Syst Evol Microbiol 2012; 62:420–424 [View Article][PubMed]
    [Google Scholar]
  8. Choi A, Yang S-J, Cho J-C. Lutibacter flavus sp. nov., a marine bacterium isolated from a tidal flat sediment. Int J Syst Evol Microbiol 2013; 63:946–951 [View Article]
    [Google Scholar]
  9. Park SC, Choe HN, Hwang YM, Baik KS, Seong CN. Lutibacter agarilyticus sp. nov., a marine bacterium isolated from shallow coastal seawater. Int J Syst Evol Microbiol 2013; 63:2678–2683 [View Article][PubMed]
    [Google Scholar]
  10. Sung H-R, Shin K-S, Ghim S-Y. Lutibacter oricola sp. nov., a marine bacterium isolated from sea water. Int J Syst Evol Microbiol 2015; 65:485–490 [View Article]
    [Google Scholar]
  11. Park S, Won S-M, Kim H, Park D-S, Yoon J-H. Aestuariivita boseongensis gen. nov., sp. nov., isolated from a tidal flat sediment. Int J Syst Evol Microbiol 2014; 64:2969–2974 [View Article][PubMed]
    [Google Scholar]
  12. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 2000; 50:1861–1868 [View Article][PubMed]
    [Google Scholar]
  13. Lányí B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1987; 19:1–67 [CrossRef]
    [Google Scholar]
  14. Barrow GI, Feltham RKA. Cowan and Steel’s Manual for the Identification of Medical Bacteria, 3rd ed. Cambridge: Cambridge University Press; 1993 [CrossRef]
    [Google Scholar]
  15. Bruns A, Rohde M, Berthe-Corti L. Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 2001; 51:1997–2006 [View Article][PubMed]
    [Google Scholar]
  16. Reichenbach H. The order Cytophagales. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH. (editors) The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd ed. New York: Springer; 1992 pp. 3631–3675
    [Google Scholar]
  17. Bernardet J-F, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070 [View Article][PubMed]
    [Google Scholar]
  18. Baumann P, Baumann L. The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes. In: Starr MP, Stolp H, Trüper HG, Balows A, Schlegel HG. (editors) The Prokaryotes Berlin: Springer; 1981 pp. 1302–1331
    [Google Scholar]
  19. Staley JT. Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. J Bacteriol 1968; 95:1921–1942[PubMed]
    [Google Scholar]
  20. Cohen-Bazire G, Sistrom WR, Stanier RY. Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Comp Physiol 1957; 49:25–68 [View Article][PubMed]
    [Google Scholar]
  21. Rainey FA, Silva J, Nobre MF, Silva MT, Da Costa MS. Porphyrobacter cryptus sp. nov., a novel slightly thermophilic, aerobic, bacteriochlorophyll a-containing species. Int J Syst Evol Microbiol 2003; 53:35–41 [View Article][PubMed]
    [Google Scholar]
  22. Yoon J-H, Kim H, Kim S-B, Kim H-J, Kim WY et al. Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 1996; 46:502–505 [View Article]
    [Google Scholar]
  23. Yoon J-H, Lee ST, Park Y-H. Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA gene sequences. Int J Syst Bacteriol 1998; 48:187–194 [View Article][PubMed]
    [Google Scholar]
  24. Yoon J-H, Kang KH, Park Y-H. Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 2003; 53:449–454 [View Article][PubMed]
    [Google Scholar]
  25. Ezaki T, Hashimoto Y, Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 1989; 39:224–229 [View Article]
    [Google Scholar]
  26. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [View Article]
    [Google Scholar]
  27. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984; 25:125–128 [View Article]
    [Google Scholar]
  28. Komagata K, Suzuki K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207 [CrossRef]
    [Google Scholar]
  29. Bernardet J-F. Family I. Flavobacteriaceae Reichenbach 1992. In: Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ. et al. (editors) Bergey’s Manual of Systematic Bacteriology, 2nd ed. vol. 4 New York: Springer; 2011 pp. 106–111
    [Google Scholar]
  30. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  31. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  32. Embley TM, Wait R. Structural lipids of eubacteria. In Goodfellow M, O’Donnell AG. (editors) Modern Microbial Methods. Chemical Methods in Prokaryotic Systematics Chichester: John Wiley & Sons; 1994 pp. 121–161
    [Google Scholar]
  33. Stackebrandt E, Goebel BM. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 1994; 44:846–849 [View Article]
    [Google Scholar]
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