1887

Abstract

A novel halophilic actinomycete strain, designated TRM 46074, was isolated from Aiding salt lake in Turpan Basin, north-west China. Strain TRM 46074 was aerobic, Gram-stain-positive and grew optimally with 12 % (w/v) NaCl. The strain was observed to produce sparse aerial mycelium with long chains of spores that were non-motile and oval or spherical in shape with a rough or smooth surface; substrate mycelium was branched and well developed. The cell wall was determined to contain -diaminopimelic acid; the diagnostic whole-cell sugars were galactose, arabinose and ribose. The diagnostic polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylglycerol and phosphatidylinositol. The predominant menaquinones were MK-9(H), MK-10(H) and MK-10(H). The G+C content of the DNA was 70.9 mol%. The major fatty acids were anteiso-C, iso-C, iso-C and iso-C. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain TRM 46074 belongs to the genus . Strain TRM 46074 had 16S rRNA gene sequence similarity of 99.6 % with the closest described species, H53. DNA–DNA hybridization between strain TRM 46074 and H53 showed 58.6 % relatedness. On the basis of the evidence from a polyphasic study, strain TRM 46074 is considered to represent a novel species in the genus , for which the name sp. nov. is proposed. The type strain is TRM 46074 (=CCTCC AA 2012014=JCM 30185).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001696
2017-03-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/3/687.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001696&mimeType=html&fmt=ahah

References

  1. Lacey J, Goodfellow M. A novel actinomycete from sugar-cane bagasse: Saccharopolyspora hirsuta gen. et. sp. nov. J Gen Microbiol 1975; 88:75–85 [View Article][PubMed]
    [Google Scholar]
  2. Korn-Wendisch F, Kempf A, Grund E, Kroppenstedt RM, Kutzner HJ. Transfer of Faenia rectivirgula kurup and agre 1983 to the genus Saccharopolyspora lacey and Goodfellow 1975, elevation of Saccharopolyspora hirsuta subsp. taberi labeda 1987 to species level, and emended description of the genus Saccharopolyspora. Int J Syst Bacteriol 1989; 39:430–441 [View Article]
    [Google Scholar]
  3. Embley TM, Wait R, Dobson G, Goodfellow M. Fatty acid composition in the classification of Saccharopolyspora hirsuta. FEMS Microbiol Lett 1987; 41:131–135 [View Article]
    [Google Scholar]
  4. Lechevalier MP, de Bievre C, Lechevalier H. Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 1977; 5:249–260 [View Article]
    [Google Scholar]
  5. Goodfellow M, Lacey J, Athalye M, Embley TM, Bowen T. Saccharopolyspora gregorii and Saccharopolyspora hordei: two new actinomycete species from fodder. Microbiology 1989; 135:2125–2139 [View Article]
    [Google Scholar]
  6. Xia Z, Guan T, Ruan J, Huang Y, Zhang L. [Studies on the actinobacterial diversity in aiding lake sediments]. Wei Sheng Wu Xue Bao 2011; 51:1023–1031[PubMed]
    [Google Scholar]
  7. Shirling EB, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol 1966; 16:313–340 [View Article]
    [Google Scholar]
  8. Kelly KL. Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors Washington, DC: US Government Printing Office; 1964
    [Google Scholar]
  9. Hasegawa T, Takizawa M, Tanida S. A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 1983; 29:319–322 [View Article]
    [Google Scholar]
  10. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974; 28:226–231[PubMed]
    [Google Scholar]
  11. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  12. Collins MD. Isoprenoid quinone analysis in classification and identification. In Goodfellow M, Minnikin DE. (editors) Chemical Methods in Bacterial Systematics London: Academic Press; 1985 pp. 267–287
    [Google Scholar]
  13. Groth I, Schumann P, Rainey FA, Martin K, Schuetze B et al. Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 1997; 47:1129–1133 [View Article][PubMed]
    [Google Scholar]
  14. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984; 25:125–128 [View Article]
    [Google Scholar]
  15. Chun J, Goodfellow M. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 1995; 45:240–245 [View Article][PubMed]
    [Google Scholar]
  16. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  17. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  18. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
    [Google Scholar]
  19. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
    [Google Scholar]
  20. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
    [Google Scholar]
  21. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article]
    [Google Scholar]
  22. Meklat A, Bouras N, Zitouni A, Sabaou N, Mathieu F et al. Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil. J Antibiot 2014; 67:299–303 [View Article][PubMed]
    [Google Scholar]
  23. He L, Li W, Huang Y, Wang L, Liu Z et al. Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 2005; 55:1939–1944 [View Article][PubMed]
    [Google Scholar]
  24. Qin S, Chen HH, Klenk HP, Kim CJ, Xu LH et al. Saccharopolyspora gloriosae sp. nov., an endophytic actinomycete isolated from the stem of Gloriosa superba L. Int J Syst Evol Microbiol 2010; 60:1147–1151 [View Article][PubMed]
    [Google Scholar]
  25. Cheng J, Zhang YG, Chen W, Li L, Zhang DF et al. Saccharopolyspora cavernae sp. nov., a novel actinomycete isolated from the swallow cave in Yunnan, south-west China. Antonie van Leeuwenhoek 2013; 104:837–843 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001696
Loading
/content/journal/ijsem/10.1099/ijsem.0.001696
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error