Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils

References

1. Botha A. The importance and ecology of yeasts in soil. Soil Biol Biochem 2011; 43:1–8 [View Article]
   [Google Scholar]
2. Yurkov AM, Kemler M, Begerow D. Species accumulation curves and incidence-based species richness estimators to appraise the diversity of cultivable yeasts from beech forest soils. PLoS One 2011; 6:e23671 [View Article][PubMed]
   [Google Scholar]
3. Kurtzman C, Fell JW, Boekhout T. The Yeasts: A Taxonomic Study, 5th ed. Amsterdam: Elsevier Science; 2011
   [Google Scholar]
4. Lachance MA. Yeast biodiversity: how many and how much?. In Péter G, Rosa C. (editors) Biodiversity and Ecophysiology of Yeasts Springer Berlin Heidelberg; 2006 pp. 1–9 [CrossRef]
   [Google Scholar]
5. Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T et al. Fungal community analysis by high-throughput sequencing of amplified markers–a user's guide. New Phytol 2013; 199:288–299 [View Article][PubMed]
   [Google Scholar]
6. Peay KG. Back to the future: natural history and the way forward in modern fungal ecology. Fungal Ecol 2014; 12:4–9 [View Article]
   [Google Scholar]
7. Mašínová T, Bahnmann BD, Větrovský T, Tomšovský M, Merunková K et al. Drivers of yeast community composition in the litter and soil of a temperate forest. FEMS Microbiol Ecol 2016; 93:fiw223 [View Article]
   [Google Scholar]
8. Sagova-Mareckova M, Cermak L, Novotna J, Plhackova K, Forstova J et al. Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl Environ Microbiol 2008; 74:2902–2907 [View Article][PubMed]
   [Google Scholar]
9. Žifčáková L, Větrovský T, Howe A, Baldrian P. Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter. Environ Microbiol 2016; 18:288–301 [View Article][PubMed]
   [Google Scholar]
10. Ihrmark K, Bödeker IT, Cruz-Martinez K, Friberg H, Kubartova A et al. New primers to amplify the fungal ITS2 region–evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiol Ecol 2012; 82:666–677 [View Article][PubMed]
    [Google Scholar]
11. Větrovský T, Baldrian P. Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED. Biol Fertil Soils 2013; 49:1027–1037 [View Article]
    [Google Scholar]
12. Aronesty E. Comparison of sequencing utility programs. Open Bioinforma J 2013; 7:1–8 [View Article]
    [Google Scholar]
13. Nilsson RH, Veldre V, Hartmann M, Unterseher M, Amend A et al. An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecol 2010; 3:284–287 [View Article]
    [Google Scholar]
14. Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010; 26:2460–2461 [View Article][PubMed]
    [Google Scholar]
15. O'Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R. Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 2005; 71:5544–5550 [View Article][PubMed]
    [Google Scholar]
16. Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AF et al. Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol 2013; 22:5271–5277 [View Article][PubMed]
    [Google Scholar]
17. Cooney DG, Emerson R. Thermophilic Fungi: An Account of their Biology, Activities, and Classification San Francisco, London: W. H. Freeman & Co; 1964
    [Google Scholar]
18. White T, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis M, Gelfand D, Shinsky J, White T. (editors) PCR Protocols: A Guide to Methods and Applications London: Academic Press; 1990
    [Google Scholar]
19. Gardes M, Bruns TD. ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Mol Ecol 1993; 2:113–118 [View Article][PubMed]
    [Google Scholar]
20. Sampaio JP, Gadanho M, Santos S, Duarte FL, Pais C et al. Polyphasic taxonomy of the basidiomycetous yeast genus Rhodosporidium: Rhodosporidium kratochvilovae and related anamorphic species. Int J Syst Evol Microbiol 2001; 51:687–697 [View Article][PubMed]
    [Google Scholar]
21. Liu XZ, Wang QM, Göker M, Groenewald M, Kachalkin AV et al. Towards an integrated phylogenetic classification of the Tremellomycetes. Stud Mycol 2015; 81:85–147 [View Article][PubMed]
    [Google Scholar]
22. Wang QM, Yurkov AM, Göker M, Lumbsch HT, Leavitt SD et al. Phylogenetic classification of yeasts and related taxa within Pucciniomycotina. Stud Mycol 2015; 81:149–189 [View Article][PubMed]
    [Google Scholar]
23. Nakase T, Suzuki M. Sporobolomyces inositophilus, a new species of ballistosporous yeast isolated from a dead leaf of Sasa sp. in Japan. Antonie van Leeuwenhoek 1987; 53:245–251 [View Article]
    [Google Scholar]
24. Mcguire KL, Allison SD, Fierer N, Treseder KK. Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons. PLoS One 2013; 8:e68278 [View Article][PubMed]
    [Google Scholar]
25. Sampaio JP, Oberwinkler F. Kriegeria Bresadola (1891). In Kurtzman CP. editor The Yeasts, A Taxonomic Study, 5th ed. Amsterdam: Elsevier; 2011 pp. 1477–1479 [CrossRef]
    [Google Scholar]