1887

Abstract

A novel strictly anaerobic, thermotolerant, moderately halophilic, organotrophic bacterium, strain MRo-4, was isolated from a sample of a microbial mat, developed under the flow of subsurface water in TauTona gold mine, South Africa. Cells of the novel isolate stained Gram-positive and were motile, spore-forming rods, 0.2–0.3 µm in width and 5–20 µm in length. Strain MRo-4 grew at 25–50 °C, at pH 7.0–8.8 and at an NaCl concentration of 5–100 g l. The isolate was able to ferment yeast extract, peptone and mono-, oligo- and polysaccharides, including cellulose and chitin. Elemental sulfur, thiosulfate, sulfate, sulfite, nitrate, nitrite, fumarate and arsenate were not reduced. The major fatty acids were iso-C, iso-C dimethyl acetyl and anteiso-C. The G+C content of the DNA was 32.9 mol%. Phylogenetic analysis of 16S rRNA gene sequences of strain MRo-4 and its nearest relatives showed its affiliation to the genus . SOL3f37, the only valid published representative of the genus, appeared to be its closest relative (96.8 % 16S rRNA gene sequence similarity). However, strains MRo-4 and SOL3f37 differed in temperature, pH and salinity ranges for growth, requirement for yeast extract and substrate profiles. Based on the phylogenetic analysis and physiological properties of the novel isolate, we propose a novel species, sp. nov. The type strain is MRo-4 (=DSM 28179=VKM B-2948).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001737
2017-05-01
2024-04-23
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/5/1457.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001737&mimeType=html&fmt=ahah

References

  1. Takai K, Moser DP, Deflaun M, Onstott TC, Fredrickson JK. Archaeal diversity in waters from deep South African gold mines. Appl Environ Microbiol 2001; 67:5750–5760 [View Article][PubMed]
    [Google Scholar]
  2. Onstott TC, Moser DP, Pfiffner SM, Fredrickson JK, Brockman FJ et al. Indigenous and contaminant microbes in ultradeep mines. Environ Microbiol 2003; 5:1168–1191 [View Article][PubMed]
    [Google Scholar]
  3. Kieft TL, Mccuddy SM, Onstott TC, Davidson M, Lin L-H et al. Geochemically generated, energy-rich substrates and indigenous microorganisms in deep, ancient groundwater. Geomicrobiol J 2005; 22:325–335 [View Article]
    [Google Scholar]
  4. Lin L-H, Hall J, Onstott TC, Gihring T, Lollar BS et al. Planktonic microbial communities associated with fracture-derived groundwater in a deep gold mine of South Africa. Geomicrobiol J 2006; 23:475–497 [CrossRef]
    [Google Scholar]
  5. Pfiffner SM, Cantu JM, Smithgall A, Peacock AD, White DC et al. Deep subsurface microbial biomass and community structure in witwatersrand basin mines. Geomicrobiol J 2006; 23:431–442 [View Article]
    [Google Scholar]
  6. Wanger G, Southam G, Onstott TC. Structural and chemical characterization of a natural fracture surface from 2.8 kilometers below land surface: biofilms in the deep subsurface. Geomicrobiol J 2006; 23:443–452 [View Article]
    [Google Scholar]
  7. Magnabosco C, Tekere M, Lau MC, Linage B, Kuloyo O et al. Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water. Front Microbiol 2014; 5:679 [View Article][PubMed]
    [Google Scholar]
  8. Magnabosco C, Ryan K, Lau MC, Kuloyo O, Sherwood Lollar B et al. A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust. ISME J 2016; 10:730–741 [View Article][PubMed]
    [Google Scholar]
  9. Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM et al. The metagenomics RAST server a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008; 9:386 [View Article][PubMed]
    [Google Scholar]
  10. Lau MC, Cameron C, Magnabosco C, Brown CT, Schilkey F et al. Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships. Front Microbiol 2014; 5:531 [View Article][PubMed]
    [Google Scholar]
  11. Slobodkin AI, Slobodkina GB. [Thermophilic prokaryotes from deep subterranean habitats]. Mikrobiologiia 2014; 83:169–183 [View Article][PubMed]
    [Google Scholar]
  12. Wiegel J. Family I. Clostridiaceae fam. nov. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W. et al. (editors) Bergey’s Manual of Systematic Bacteriology, 2nd ed. vol. 3 New York: Springer; 2009 pp. 736
    [Google Scholar]
  13. Podosokorskaya OA, Merkel AY, Gavrilov SN, Fedoseev I, Heerden E et al. Tepidibacillus infernus sp. nov., a moderately thermophilic, selenate- and arsenate-respiring hydrolytic bacterium isolated from a gold mine, and emended description of the genus Tepidibacillus. Int J Syst Evol Microbiol 2016; 66:3189–3194 [View Article][PubMed]
    [Google Scholar]
  14. Lippmann-Pipke J, Erzinger J, Zimmer M, Kujawa C, Boettcher M et al. Direct observation of geo-gas transport through an inactive fault system at 3.54 km depth, TauTona gold mine, South Africa. Applied Geochemistry 2011; 26:2134–2146 [CrossRef]
    [Google Scholar]
  15. Podosokorskaya OA, Bonch-Osmolovskaya EA, Novikov AA, Kolganova TV, Kublanov IV. Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae. Int J Syst Evol Microbiol 2013; 63:86–92 [View Article][PubMed]
    [Google Scholar]
  16. Härtig C. Rapid identification of fatty acid methyl esters using a multidimensional gas chromatography-mass spectrometry database. J Chromatogr A 2008; 1177:159–169 [View Article][PubMed]
    [Google Scholar]
  17. Slobodkina GB, Panteleeva AN, Kostrikina NA, Kopitsyn DS, Bonch-Osmolovskaya EA et al. Tepidibacillus fermentans gen. nov., sp. nov.: a moderately thermophilic anaerobic and microaerophilic bacterium from an underground gas storage. Extremophiles 2013; 17:833–839 [View Article][PubMed]
    [Google Scholar]
  18. Merkel AY, Podosokorskaya OA, Chernyh NA, Bonch-Osmolovskaya EA. Occurrence, diversity, and abundance of methanogenic archaea in terrestrial hot springs of Kamchatka and Saõ Miguel Island. Microbiology 2015; 84:577–583 [View Article]
    [Google Scholar]
  19. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  20. Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL et al. Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil. Int J Syst Evol Microbiol 2011; 61:99–104 [View Article][PubMed]
    [Google Scholar]
  21. Bonch-Osmolovskaya EA, Sokolova TG, Kostrikina NA, Zavarzin GA. Desulfurella acetivorans gen. nov. and sp. nov.—a new thermophilic sulfur-reducing Eubacterium. Arch Microbiol 1990; 153:151–155 [View Article]
    [Google Scholar]
  22. Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ et al. Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater. Int J Syst Evol Microbiol 2012; 62:3018–3023 [View Article][PubMed]
    [Google Scholar]
  23. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010; 59:307–321 [View Article][PubMed]
    [Google Scholar]
  24. Anisimova M, Gil M, Dufayard JF, Dessimoz C, Gascuel O. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst Biol 2011; 60:685–699 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001737
Loading
/content/journal/ijsem/10.1099/ijsem.0.001737
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error