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- Volume 67, Issue 6
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f Thioclava arenosa sp. nov., isolated from sea sand
- Authors: Chutimon Thongphrom1 , Jong-Hwa Kim1 , Nagamani Bora2 , Wonyong Kim1
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- VIEW AFFILIATIONS
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1 1Department of Microbiology, Chung-Ang University College of Medicine, Seoul, Republic of Korea 2 2School of Biosciences, University of Nottingham, Sutton Bonington, UK
- *Correspondence: Nagamani Bora, [email protected] Wonyong Kim, [email protected]
- First Published Online: 09 June 2017, International Journal of Systematic and Evolutionary Microbiology 67: 1735-1739, doi: 10.1099/ijsem.0.001853
- Subject: New Taxa - Proteobacteria
- Received:
- Accepted:
- Cover date:




Thioclava arenosa sp. nov., isolated from sea sand, Page 1 of 1
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A Gram-staining-negative, non-spore-forming, non-motile, rod-shaped, facultatively anaerobe bacterial strain, designated CAU 1312T, was isolated from sea sand of Eurwangri beach, South Korea. The strain’s taxonomic position was investigated using a polyphasic approach. CAU 1312T grew at temperatures from 20 to 40 °C, in the range of pH 6.0–9.0 and at salinities from 1–4 % (w/v). The results of phylogenetic analysis based on the 16S rRNA gene sequence revealed that CAU 1312T represented a member of the genus Thioclava and was most closely related to Thioclava atlantica 13D2W-2T (similarity 96.53 %). The strain contained Q-10 as the predominant menaquinone and summed feature 8 (C18 : 1ω7c/ω6c) as the major fatty acid. The polar lipids of CAU 1312T consisted of phosphatidylethanolamine, phosphatidylglycerol, two aminophospholipids, a phosphoglycolipid, and two unidentified phospholipids. The DNA G+C content was 64.7 mol%. On the basis of phenotypic and chemotaxonomic properties and phylogenetic inference, CAU 1312T is considered to represent a novel species of the genus Thioclava , for which the name Thioclava arenosa sp. nov. is proposed. The type strain is CAU 1312T(=KCTC 52190T=NBRC 111989T).
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The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CAU 1312T is KU671051.
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Two supplementary figures are available with the online Supplementary Material.
- Keyword(s): Alphaproteobacteria, Thioclava arenosa, sea sand
© 2017 IUMS | Published by the Microbiology Society
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1. Sorokin DY, Tourova TP, Spiridonova EM, Rainey FA, Muyzer G. Thioclava pacifica gen. nov., sp. nov., a novel facultatively autotrophic, marine, sulfur-oxidizing bacterium from a near-shore sulfidic hydrothermal area. Int J Syst Evol Microbiol 2005;55:1069–1075 [CrossRef][PubMed]
-
2. Zhang R, Lai Q, Wang W, Li S, Shao Z. Thioclava dalianensis sp. nov., isolated from surface sea water. Int J Syst Evol Microbiol 2013;63:2981–2985 [CrossRef][PubMed]
-
3. Lai Q, Li S, Xu H, Jiang L, Zhang R et al. Thioclava atlantica sp. nov., isolated from deep sea sediment of the Atlantic Ocean. Antonie van Leeuwenhoek 2014;106:919–925 [CrossRef][PubMed]
-
4. Liu Y, Lai Q, du J, Xu H, Jiang L et al. Thioclava indica sp. nov., isolated from surface seawater of the Indian Ocean. Antonie van Leeuwenhoek 2015;107:297–304 [CrossRef][PubMed]
-
5. Gordon RE, Mihm JM. Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 1962;98:628–636 [CrossRef]
-
6. Marmur J. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 1961;3:208–218 [CrossRef]
-
7. Lane DJ. 16S/23S rRNA sequencing. In Stackebrandt E, Goodfellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics London: John Wiley & Sons Ltd; 1991; pp.115–175
-
8. Larkin MA, Blackshields G, Brown NP, Chenna R, Mcgettigan PA et al. Clustal W and clustal X version 2.0. Bioinformatics 2007;23:2947–2948 [CrossRef][PubMed]
-
9. Jukes TH, Cantor CR. Evolution of protein molecules. In Munro HH. (editor) Mammalian Protein Metabolism New York: Academic Press; 1969; pp.21–132[CrossRef]
-
10. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406–425[PubMed]
-
11. Fitch WM, Margoliash E. Construction of phylogenetic trees. Science 1967;155:279–284 [CrossRef][PubMed]
-
12. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981;17:368–376 [CrossRef][PubMed]
-
13. Felsenstein J. PHYLIP – phylogeny inference package (version 3.2). Cladistics 1989;5:164–166
-
14. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985;39:783–791 [CrossRef]
-
15. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984;25:125–128 [CrossRef]
-
16. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 2000;50:1861–1868 [CrossRef][PubMed]
-
17. Cappuccino JG, Sherman N. Microbiology: a Laboratory Manual, 6th ed. Menlo Park, CA: Benjamin/Cummings; 2002
-
18. Lányí B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1988;19:1–67 [CrossRef]
-
19. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994; pp.607–654
-
20. Yu Y, Yan SL, Li HR, Zhang XH. Roseicitreum antarcticum gen. nov., sp. nov., an aerobic bacteriochlorophyll a-containing alphaproteobacterium isolated from Antarctic sandy intertidal sediment. Int J Syst Evol Microbiol 2011;61:2173–2179 [CrossRef][PubMed]
-
21. Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M. Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 1980;188:221–233 [CrossRef]
-
22. Komagata K, Suzuki K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1988;19:161–208 [CrossRef]
-
23. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984;2:233–241 [CrossRef]

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