1887

Abstract

A novel actinomycete, designated strain EURKPP3H10, was isolated from surface-sterilized roots of Dehnh., collected from Kamphaengphet Silvicultural Research Station, Kamphaengphet province, Thailand. The taxonomic position of strain EURKPP3H10 was studied using a polyphasic approach. Phylogenetic evaluation based on 16S rRNA gene sequence analysis showed that strain EURKPP3H10 belongs to the genus , with the highest sequence similarity to LIPI11-2-Ac046 (99.2 %). Colonies of strain EURKPP3H10 were orange yellow. Spherical sporangia with motile spores were observed. The strain contained -diaminopimelic acid and acofriose, arabinose, galactose, glucose, mannose, xylose and ribose in whole-cell hydrolysates. The predominant menaquinones were MK-9(H) and MK-9(H). The major fatty acids were iso-C, Cω8, Cω9 and C. The polar lipids of the strain were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and unknown lipids. The DNA G+C content of the genomic DNA was 71.5 mol%. Based on comparative analysis of physiological, biochemical and chemotaxonomic data, including DNA–DNA hybridization, strain EURKPP3H10 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is EURKPP3H10 (=BCC 77605=NBRC 111482).

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2017-08-01
2024-04-20
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References

  1. Tamura T, Hayakawa M, Hatano K. A new genus of the order Actinomycetales, Cryptosporangium gen. nov., with descriptions of Cryptosporangium arvum sp. nov. and Cryptosporangium japonicum sp. nov. Int J Syst Bacteriol 1998; 48:995–1005 [View Article][PubMed]
    [Google Scholar]
  2. Normand P, Benson DR. Genus Cryptosporangium. In Goodfellow M, Kámpfer P, Busse H-J, Trujillo ME, Suzuki K. et al. (editors) Bergey's Manual of Systematic Bacteriology, 2nd ed. vol. 5 The Actinobacteria, Part A New York: Springer; 2012 pp. 522–525
    [Google Scholar]
  3. Tamura T, Hatano K. Phylogenetic analysis of the genus Actinoplanes and transfer of Actinoplanes minutisporangius Ruan et al. 1986 and 'Actinoplanes aurantiacus' to Cryptosporangium minutisporangium comb. nov. and Cryptosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 2001; 51:2119–2125 [View Article][PubMed]
    [Google Scholar]
  4. Ara I, Tsetseg B, Daram D, Suto M, Ando K. Cryptosporangium mongoliense sp. nov., isolated from soil. Int J Syst Evol Microbiol 2012; 62:2480–2484 [View Article][PubMed]
    [Google Scholar]
  5. Nurkanto A, Lisdiyanti P, Hamada M, Ratnakomala S, Shibata C et al. Cryptosporangium cibodasense sp. nov., isolated from leaf litter in Indonesia. Int J Syst Evol Microbiol 2015; 65:4632–4637 [View Article][PubMed]
    [Google Scholar]
  6. Himaman W, Thamchaipenet A, Pathom-aree W, Duangmal K. Actinomycetes from Eucalyptus and their biological activities for controlling Eucalyptus leaf and shoot blight. Microbiol Res 2016; 188-189:42–52 [View Article][PubMed]
    [Google Scholar]
  7. Hayakawa M, Nonomura H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 1987; 65:501–509 [View Article]
    [Google Scholar]
  8. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA et al. Practical Streptomyces Genetics Norwich, England: John Innes Foundation; 2000
    [Google Scholar]
  9. Mingma R, Pathom-Aree W, Trakulnaleamsai S, Thamchaipenet A, Duangmal K. Isolation of rhizospheric and roots endophytic actinomycetes from Leguminosae plant and their activities to inhibit soybean pathogen, Xanthomonas campestris pv. glycine. World J Microbiol Biotechnol 2014; 30:271–280 [View Article][PubMed]
    [Google Scholar]
  10. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon–e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  11. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
    [Google Scholar]
  12. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
    [Google Scholar]
  13. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  14. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  15. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article][PubMed]
    [Google Scholar]
  16. Shirling EB, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol 1966; 16:313–340 [View Article]
    [Google Scholar]
  17. Mundie DA. The NBS/ISCC Color System/David A Mundie Pittsburgh, PA: Polymath Systems. 535.6 dc-20; 1995
    [Google Scholar]
  18. Duangmal K, Thamchaipenet A, Ara I, Matsumoto A, Takahashi Y. Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant. Int J Syst Evol Microbiol 2008; 58:2439–2442 [View Article][PubMed]
    [Google Scholar]
  19. Gordon RE, Barnett DA, Handerhan JE, Pang CH-N. Nocardia coeliaca, Nocardia autotrophica, and the Nocardin Strain. Int J Syst Bacteriol 1974; 24:54–63 [View Article]
    [Google Scholar]
  20. Williams ST, Goodfellow M, Alderson G, Wellington EM, Sneath PH et al. Numerical classification of Streptomyces and related genera. J Gen Microbiol 1983; 129:1743–1813 [View Article][PubMed]
    [Google Scholar]
  21. Gerhardt P, Murray RGE, Wood WA, Krieg NR. Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994
    [Google Scholar]
  22. Becker B, Lechevalier MP, Lechevalier HA. Chemical composition of cell-wall preparations from strains of various form-genera of aerobic actinomycetes. Appl Microbiol 1965; 13:236–243[PubMed]
    [Google Scholar]
  23. Hasegawa T, Takizawa M, Tanida S. A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 1983; 29:319–322 [View Article]
    [Google Scholar]
  24. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974; 28:226–231[PubMed]
    [Google Scholar]
  25. Asano K, Sano H, Masunaga I, Kawamoto I. 3-O-Methylrhamnose: identification and distribution in Catellatospora species and Related Actinomycetes. Int J Syst Bacteriol 1989; 39:56–60 [View Article]
    [Google Scholar]
  26. Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 1977; 100:221–230 [View Article][PubMed]
    [Google Scholar]
  27. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  28. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M. Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 1977; 27:104–117 [View Article]
    [Google Scholar]
  29. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984; 25:125–128 [View Article]
    [Google Scholar]
  30. Sui JL, Xu XX, Qu Z, Wang HL, Lin HP et al. Streptomyces sanyensis sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol 2011; 61:1632–1637 [View Article][PubMed]
    [Google Scholar]
  31. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:52–155
    [Google Scholar]
  32. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [CrossRef]
    [Google Scholar]
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