1887

Abstract

A halophilic bacterial strain, X49, was isolated from the Korean traditional salt-fermented seafood Daemi-jeot. X49 was an obligately aerobic, Gram-stain-negative, motile, oval or rod-shaped (0.5–1.0×1.2–3.2 µm) bacterium. After 2 days of growth, colonies on Marine agar medium were orange and circular with entire margins. X49 growth was detected at 10–37 °C and pH 4.5–8.5 in the presence of 0–26 % (w/v) NaCl. The 16S rRNA gene sequence of strain X49 was most similar to that of the type strain of SW32 and shared a sequence similarity of 94.7–98.6 % with type strains of species of the genus . The predominant fatty acids were C, Cω7 and C 3OH. The major isoprenoid quinone was Q9 (93 %), and minor quinones were Q8 (4 %) and Q10 (3 %). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylserine, two unidentified aminolipids, two unidentified phospholipids and two unidentified lipids. The genomic DNA G+C content was 59.1 mol%. The level of the ANI value between strain X49 and SW32, the most closely related species of the genus , was 89.32 %. Based on the low ANI value, strain X49 and its reference strains represent genotypically distinct species. Based on this polyphasic taxonomic analysis, strain X49 represents a novel species of the genus . The name sp. nov. is proposed and the type strain is X49 (=KACC 14623=JCM 16805).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002170
2017-09-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/9/3576.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002170&mimeType=html&fmt=ahah

References

  1. Franzmann PD, Wehmeyer U, Stackebrandt E. Halomonadaceae fam. nov., a new family of the class proteobacteria to accommodate the genera Halomonas and Deleya. Syst Appl Microbiol 1988; 11:16–19 [View Article]
    [Google Scholar]
  2. Sánchez-Porro C, de La Haba RR, Soto-Ramírez N, Márquez MC, Montalvo-Rodríguez R et al. Description of Kushneria aurantia gen. nov., sp. nov., a novel member of the family Halomonadaceae, and a proposal for reclassification of Halomonas marisflavi as Kushneria marisflavi comb. nov., of Halomonas indalinina as Kushneria indalinina comb. nov. and of Halomonas avicenniae as Kushneria avicenniae comb. nov. Int J Syst Evol Microbiol 2009; 59:397–405 [View Article][PubMed]
    [Google Scholar]
  3. Soto-Ramírez N, Sánchez-Porro C, Rosas S, González W, Quiñones M et al. Halomonas avicenniae sp. nov., isolated from the salty leaves of the black mangrove Avicennia germinans in Puerto Rico. Int J Syst Evol Microbiol 2007; 57:900–905 [View Article][PubMed]
    [Google Scholar]
  4. Cabrera A, Aguilera M, Fuentes S, Incerti C, Russell NJ et al. Halomonas indalinina sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain. Int J Syst Evol Microbiol 2007; 57:376–380 [View Article][PubMed]
    [Google Scholar]
  5. Yoon JH, Choi SH, Lee KC, Kho YH, Kang KH et al. Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea. Int J Syst Evol Microbiol 2001; 51:1171–1177 [View Article][PubMed]
    [Google Scholar]
  6. Bangash A, Ahmed I, Abbas S, Kudo T, Shahzad A et al. Kushneria pakistanensis sp. nov., a novel moderately halophilic bacterium isolated from rhizosphere of a plant (Saccharum spontaneum) growing in salt mines of the Karak area in Pakistan. Antonie van Leeuwenhoek 2015; 107:991–1000 [View Article][PubMed]
    [Google Scholar]
  7. Zou Z, Wang G. Kushneria sinocarnis sp. nov., a moderately halophilic bacterium isolated from a Chinese traditional cured meat. Int J Syst Evol Microbiol 2010; 60:1881–1886 [View Article][PubMed]
    [Google Scholar]
  8. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory; 1989
    [Google Scholar]
  9. Arahal DR, Ludwig W, Schleifer KH, Ventosa A. Phylogeny of the family Halomonadaceae based on 23S and 165 rDNA sequence analyses. Int J Syst Evol Microbiol 2002; 52:241–249 [View Article][PubMed]
    [Google Scholar]
  10. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67: [View Article][PubMed]
    [Google Scholar]
  11. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article][PubMed]
    [Google Scholar]
  12. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  13. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  14. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
    [Google Scholar]
  15. Kluge AG, Farris JS. Quantitative phyletics and the evolution of Anurans. Syst Biol 1969; 18:1–32 [View Article]
    [Google Scholar]
  16. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article][PubMed]
    [Google Scholar]
  17. Tittsler RP, Sandholzer LA. The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 1936; 31:575[PubMed]
    [Google Scholar]
  18. Collins MD, Jones D. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 1981; 45:316–354[PubMed]
    [Google Scholar]
  19. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  20. Xin H, Itoh T, Zhou P, Suzuki K, Kamekura M et al. Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 2000; 50:1297–1303 [View Article][PubMed]
    [Google Scholar]
  21. Tindall BJ. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 1990; 66:199–202 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002170
Loading
/content/journal/ijsem/10.1099/ijsem.0.002170
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error