1887

Abstract

A yellow-pigmented strain, designated Y4AR-5, was characterized by using a polyphasic approach. The strain was isolated from a tundra soil from near Longyearbyen, Svalbard Islands, Norway. The cells were Gram-stain-negative, aerobic, rod-shaped and non-motile. Growth occurred at 4–28 °C (optimum 20 °C) and pH 6.0–9.0 (optimum pH 8.0) and with 0–0.5 % (w/v) NaCl (optimum 0 %). The major respiratory quinone was MK-7. The polar lipids were phosphatidylethanolamine (PE), an aminophospholipid (APL), a phospholipid (PL), an unidentified aminolipid (AL) and two unidentified lipids. The results of analysis of the 16S rRNA gene indicated that the novel strain was most closely related to members of the genus (96.2 % sequence similarity with ). The genomic DNA G+C content was 45.9 mol%. The major cellular fatty acids were summed feature 3 (Cω7 and/or Cω6), Cω5, iso-C 3-OH and iso-C. On the basis of its phenotypic and genotypic properties, strain Y4AR-5 should be classified as representing a novel species of the genus , for which the name sp. nov. is proposed. The type strain is Y4AR-5 (=CCTCC AB 2015352=KCTC 52490).

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2017-12-01
2024-04-18
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References

  1. Larkin JM, Borrall R. Family I. Spirosomaceae Larkin and Borrall 1978, 595AL. In Krieg NR, Holt JG. (editors) Bergey’s Manual of Systematic Bacteriology vol. 1 Baltimore, MD: Williams & Wilkins; 1984 pp. 125–132
    [Google Scholar]
  2. Baik KS, Kim MS, Park SC, Lee DW, Lee SD et al. Spirosoma rigui sp. nov., isolated from fresh water. Int J Syst Evol Microbiol 2007; 57:2870–2873 [View Article][PubMed]
    [Google Scholar]
  3. Ten LN, Xu JL, Jin FX, Im WT, Oh HM et al. Spirosoma panaciterrae sp. nov., isolated from soil. Int J Syst Evol Microbiol 2009; 59:331–335 [View Article][PubMed]
    [Google Scholar]
  4. Finster KW, Herbert RA, Lomstein BA. Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma. Int J Syst Evol Microbiol 2009; 59:839–844 [View Article][PubMed]
    [Google Scholar]
  5. Fries J, Pfeiffer S, Kuffner M, Sessitsch A. Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea. Int J Syst Evol Microbiol 2013; 63:4586–4590 [View Article][PubMed]
    [Google Scholar]
  6. Chang X, Jiang F, Wang T, Kan W, Qu Z et al. Spirosoma arcticum sp. nov., isolated from high Arctic glacial till. Int J Syst Evol Microbiol 2014; 64:2233–2237 [View Article][PubMed]
    [Google Scholar]
  7. Ahn JH, Weon HY, Kim SJ, Hong SB, Seok SJ et al. Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma. Int J Syst Evol Microbiol 2014; 64:3230–3234 [View Article][PubMed]
    [Google Scholar]
  8. Kim DU, Lee H, Kim SG, Ahn JH, Park SY et al. Spirosoma aerolatum sp. nov., isolated from a motor car air conditioning system. Int J Syst Evol Microbiol 2015; 65:4003–4007 [View Article][PubMed]
    [Google Scholar]
  9. Hatayama K, Kuno T. Spirosoma fluviale sp. nov., isolated from river water. Int J Syst Evol Microbiol 2015; 65:3447–3450 [View Article][PubMed]
    [Google Scholar]
  10. Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ et al. Spirosoma aerophilum sp. nov., isolated from an air sample. Int J Syst Evol Microbiol 2016; 66:2342–2346 [View Article][PubMed]
    [Google Scholar]
  11. Yang SS, Tang K, Zhang X, Wang J, Wang X et al. Spirosoma soli sp. nov., isolated from biological soil crusts. Int J Syst Evol Microbiol 2016; 66:5568–5574 [View Article][PubMed]
    [Google Scholar]
  12. Joo ES, Kim EB, Jeon SH, Srinivasan S, Kim MK. Spirosoma swuense sp. nov., isolated from wet soil. Int J Syst Evol Microbiol 2017; 67:532–536 [View Article][PubMed]
    [Google Scholar]
  13. Li Y, Ai MJ, Sun Y, Zhang YQ, Zhang JQ et al. Spirosoma lacussanchae sp. nov., a phosphate-solubilizing bacterium isolated from a fresh water reservoir. Int J Syst Evol Microbiol 2017; 67:3144–3149 [View Article][PubMed]
    [Google Scholar]
  14. Lee JJ, Lee YH, Park SJ, Lee SY, Kim BO et al. Spirosoma knui sp. nov., a radiation-resistant bacterium isolated from the Han river. Int J Syst Evol Microbiol 2017; 67:1359–1365 [View Article][PubMed]
    [Google Scholar]
  15. Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991; 173:697–703 [View Article][PubMed]
    [Google Scholar]
  16. Lane DJ. 16S/23S rRNA sequencing. In Stackebrandt E, Goodfellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics Chichester, UK: Wiley; 1991 pp. 115–175
    [Google Scholar]
  17. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  18. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  19. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
  20. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  21. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed]
    [Google Scholar]
  22. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993; 10:512–526[PubMed]
    [Google Scholar]
  23. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
    [Google Scholar]
  24. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article][PubMed]
    [Google Scholar]
  25. Doetsch R. Determinative methods of light microscopy. In Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA. et al. (editors) Manual of Methods for General Bacteriology Washington, DC: American Society for Microbiology; 1981 pp. 21–33
    [Google Scholar]
  26. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 2000; 50:1861–1868 [View Article][PubMed]
    [Google Scholar]
  27. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
    [Google Scholar]
  28. Gosink JJ, Woese CR, Staley JT. Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga–Flavobacterium–Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 1998; 48:223–235 [View Article][PubMed]
    [Google Scholar]
  29. Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070 [View Article][PubMed]
    [Google Scholar]
  30. Bauer AW, Kirby WM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 1966; 45:493–496[PubMed]
    [Google Scholar]
  31. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989; 39:159–167 [View Article]
    [Google Scholar]
  32. Xie CH, Yokota A. Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 2003; 49:345–349 [View Article][PubMed]
    [Google Scholar]
  33. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  34. Embley TM, Wait R. Structual lipids of eubacteria. In Goodfellow M, O'Donnell AG. (editors) Chemical Methods in Prokaryotic Systematics Chichester, UK: Wiley; 1994 pp. 121–161
    [Google Scholar]
  35. Sasser M. Identification of bacteria through fatty acid analysis. In Klement Z, Rudolph K, Sands DC. (editors) Methods in Phytobacteriology Budapest: Akademiai Kaido; 1990 pp. 199–204
    [Google Scholar]
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