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- Volume 68, Issue 1
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f Genome analysis-based reclassification of Bacillus weihenstephanensis as a later heterotypic synonym of Bacillus mycoides
- Authors: Yang Liu1 , Qiliang Lai1 , Zongze Shao1
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1 State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration, Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, PR China
- *Correspondence: Zongze Shao [email protected]
- First Published Online: 02 November 2017, International Journal of Systematic and Evolutionary Microbiology 68: 106-112, doi: 10.1099/ijsem.0.002466
- Subject: New Taxa - Firmicutes and Related Organisms
- Received:
- Accepted:
- Cover date:




Genome analysis-based reclassification of Bacillus weihenstephanensis as a later heterotypic synonym of Bacillus mycoides, Page 1 of 1
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The aim of this study was to clarify the taxonomic status of the species Bacillus weihenstephanensis . A complete genome sequence for the type strain of B. weihenstephanensis was compared against that of the closely related type strain of Bacillus mycoides . The digital DNA–DNA hybridization and average nucleotide identity values between the two type strains was greater than two recognized thresholds for bacterial species delineation, indicating that they should belong to the same genomospecies. The psychrotolerant characteristic and signature sequences of 16S rRNA and cspA genes were incapable of distinguishing B. weihenstephanensis from some non- B. weihenstephanensis strains. Meanwhile, the metabolic, physiological and chemotaxonomic features for the type strain of B. weihenstephanensis were shown to be congruent with those of B. mycoides . On this basis, the taxonomic affiliations of related strains from the Genbank database were determined using multilocus sequence typing and genomic analyses. Therefore, we propose Bacillus weihenstephanensis as a later heterotypic synonym of Bacillus mycoides and correction of erroneous species identifications for several strains.
- Keyword(s): multilocus sequence typing, Bacillus weihenstephanensis, heterotypic synonym, reclassification, genome analysis, Bacillus mycoides
© 2018 IUMS | Published by the Microbiology Society
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1. Rasko DA, Altherr MR, Han CS, Ravel J. Genomics of the Bacillus cereus group of organisms. FEMS Microbiol Rev 2005;29:303–329 [CrossRef][PubMed]
-
2. Liu Y, du J, Lai Q, Zeng R, Ye D et al. Proposal of nine novel species of the Bacillus cereus group. Int J Syst Evol Microbiol 2017;67:2499–2508 [CrossRef][PubMed]
-
3. Lechner S, Mayr R, Francis KP, Prüss BM, Kaplan T et al. Bacillus weihenstephanensis sp. nov. is a new psychrotolerant species of the Bacillus cereus group. Int J Syst Bacteriol 1998;48:1373–1382 [CrossRef][PubMed]
-
4. Nakamura LK, Jackson MA. Clarification of the taxonomy of Bacillus mycoides. Int J Syst Bacteriol 1995;45:46–49 [CrossRef]
-
5. Liu Y, Lai Q, Göker M, Meier-Kolthoff JP, Wang M et al. Genomic insights into the taxonomic status of the Bacillus cereus group. Sci Rep 2015;5:14082 [CrossRef][PubMed]
-
6. Liu Y, Lai Q, du J, Shao Z. Genetic diversity and population structure of the Bacillus cereus group bacteria from diverse marine environments. Sci Rep 2017;7:689 [CrossRef][PubMed]
-
7. Zheng J, Gao Q, Liu L, Liu H, Wang Y et al. Comparative genomics of Bacillus thuringiensis reveals a path to specialized exploitation of multiple invertebrate hosts. MBio 2017;8:e00822-17 [CrossRef][PubMed]
-
8. Soufiane B, Côté JC. Bacillus thuringiensis serovars bolivia, vazensis and navarrensis meet the description of Bacillus weihenstephanensis. Curr Microbiol 2010;60:343–349 [CrossRef][PubMed]
-
9. Fiedoruk K, Drewnowska JM, Daniluk T, Leszczynska K, Iwaniuk P et al. Ribosomal background of the Bacillus cereus group thermotypes. Sci Rep 2017;7:46430 [CrossRef][PubMed]
-
10. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013;14:60 [CrossRef][PubMed]
-
11. Lee I, Kim YO, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2015;66:1100–1103 [CrossRef][PubMed]
-
12. Wayne LG, Moore WEC, Stackebrandt E, Kandler O, Colwell RR et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987;37:463–464 [CrossRef]
-
13. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009;106:19126–19131 [CrossRef][PubMed]
-
14. Miller RA, Beno SM, Kent DJ, Carroll LM, Martin NH et al. Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments. Int J Syst Evol Microbiol 2016;66:4744–4753 [CrossRef][PubMed]
-
15. Guinebretière MH, Auger S, Galleron N, Contzen M, de Sarrau B et al. Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus group occasionally associated with food poisoning. Int J Syst Evol Microbiol 2013;63:31–40 [CrossRef][PubMed]
-
16. Priest FG, Barker M, Baillie LW, Holmes EC, Maiden MC. Population structure and evolution of the Bacillus cereus group. J Bacteriol 2004;186:7959–7970 [CrossRef][PubMed]

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