1887

Abstract

A novel strain, designated as MH2460, was isolated from marine sediment collected from 12 m depth in Rostami seaport, Bushehr Province in Iran. On International Project 2 medium it produced branching substrate hyphae that developed into a large number of irregularly shaped spores in 8 days. It showed optimal growth at 25–35 °C, pH 6.0–8.0 and in salinity between 2.5–5 % (w/v) NaCl. Chemotaxonomic and molecular characteristics of the isolate matched descriptions for members of the genus . Whole-cell hydrolysates of strain MH2460 contained -diaminopimelic acids along with glucose, ribose and small traces of xylose and galactose. The phospholipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannosides as well as two unidentified phosphoglycolipids, one unidentified phospholipid and an unidentified aminolipid. The predominant menaquinones were MK-11(H) and MK-10(H). The fatty-acid pattern was mainly composed of -C, -C, -C and -C. The strain belongs to the genus based on 16S rRNA gene sequence with the highest pairwise sequence identity (98.3 %) with KLBMP 1483. The DNA–DNA hybridization value showed 53.9±2.7 % identity when MH2460 was compared to this reference strain. The G+C content of the DNA was 70.2 mol%. Based on phenotypic, biochemical, chemotaxonomic and genotypic features, strain MH2460 (DSM 103727=UTMC 2460=NCCB 100631) is considered to represent a novel species of the genus , for which the name is proposed.

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2018-07-01
2024-04-24
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References

  1. Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Evol Microbiol 1997; 47:479–491 [View Article]
    [Google Scholar]
  2. Labeda DP, Testa RT, Lechevalier MP, Lechevalier HA. Glycomyces, a new genus of the Actinomycetales. Int J Syst Evol Microbiol 1985; 35:417–421 [View Article]
    [Google Scholar]
  3. Labeda DP, Kroppenstedt RM. Emended description of the genus Glycomyces and description of Glycomyces algeriensis sp. nov., Glycomyces arizonensis sp. nov. and Glycomyces lechevalierae sp. nov. Int J Syst Evol Microbiol 2004; 54:2343–2346 [View Article][PubMed]
    [Google Scholar]
  4. Parte AC. (LPSN) List of Prokaryotic names with Standing in Nomenclature; 2018
  5. Labeda DP. Glycomyces. In: Bergey's Manual of Systematics of Archaea and Bacteria Hoboken, New Jersey: John Wiley & Sons, Ltd; 2015
    [Google Scholar]
  6. Nolan RD, Cross T. Isolation and screening of actinomycetes. In: Actinomycetes in Biotechnology Cambridge, Massachusetts: Academic Press; 1988
    [Google Scholar]
  7. Subramani R, Aalbersberg W. Culturable rare Actinomycetes: diversity, isolation and marine natural product discovery. Appl Microbiol Biotechnol 2013; 97:9291–9321 [View Article][PubMed]
    [Google Scholar]
  8. Et S, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Evol Microbiol 1966; 16:313–340
    [Google Scholar]
  9. Kelly K. Inter-Society Color Council–national Bureau of Standards Color Name Charts Illustrated with Centroid Colors Washington, DC: US Government Printing Office; 1964
    [Google Scholar]
  10. Kawato Ns R. Streptomyces herbaricolor sp. nov., supplement: a single technique for microscopical observation. Mem Osaka Univ Lib Arts Educ 1959; 8:114–119
    [Google Scholar]
  11. Wink J. Polyphasic taxonomy and antibiotic formation in some closely related genera of the family Pseudonocardiaceae. Recent Res Develop Antibiot 2002; 2:97–140
    [Google Scholar]
  12. Williams S, Goodfellow M, Alderson G. Genus Streptomyces Waksman and Henrici 1943, 339AL. In Williams ST, Sharpe ME, Holt JG. (editors) Bergeys Manual of Systematic Bacteriology vol. 4 Baltimore: Williams & Wilkins; 1989 pp. 2452–2492
    [Google Scholar]
  13. Ludwig W, Euzéby J, Schumann P, Busse HJ, Trujillo ME et al. Road map of the phylum Actinobacteria. Bergey’s Manual® of Systematic Bacteriology Berlin, Germany: Springer; 2012 pp. 1–28
    [Google Scholar]
  14. Rhuland LE, Work E, Denman R, Hoare D. The behavior of the isomers of α,ε-diaminopimelic acid on paper chromatograms. J Am Chem Soc 1955; 77:4844–4846 [View Article]
    [Google Scholar]
  15. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974; 28:226–231[PubMed]
    [Google Scholar]
  16. Bligh EG, Dyer WJ. A rapid method of total lipid extraction and purification. Can J Biochem Physiol 1959; 37:911–917 [View Article][PubMed]
    [Google Scholar]
  17. Tindall BJ, Sikorski J, Smibert RA, Krieg NR. Phenotypic characterization and the principles of comparative systematics. Methods for General and Molecular Microbiology, 3rd ed. Washington, DC: American Society of Microbiology; 2007 pp. 330–393
    [Google Scholar]
  18. Kröger A. Determination of contents and redox states of ubiquinone and menaquinone. Methods Enzymol 1978; 53:579–591[PubMed]
    [Google Scholar]
  19. Kämpfer P, Kroppenstedt RM. Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 1996; 42:989–1005 [View Article]
    [Google Scholar]
  20. Klatte S, Kroppenstedt RM, Rainey FA. Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus-species. Syst Appl Microbiol 1994; 17:355–360 [View Article]
    [Google Scholar]
  21. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiology Letters 1984; 25:125–128
    [Google Scholar]
  22. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  23. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947–2948 [View Article][PubMed]
    [Google Scholar]
  24. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  25. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  26. Meier‐kolthoff JP, Auch AF, Klenk HP, Göker M. Highly parallelized inference of large genome‐based phylogenies. Concurr Comp-Pract E 2014; 26:1715–1729 [View Article]
    [Google Scholar]
  27. Goloboff PA, Catalano SA. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 2016; 32:221–238
    [Google Scholar]
  28. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014; 30:1312–1313 [View Article][PubMed]
    [Google Scholar]
  29. Pattengale ND, Alipour M, Bininda-Emonds OR, Moret BM, Stamatakis A. How many bootstrap replicates are necessary?. J Comput Biol 2010; 17:337–354 [View Article][PubMed]
    [Google Scholar]
  30. Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. Phylogenetic Inference. In Hiillis DM, Moritz D, Mable BK. (editors) Molecular Systematics Sunderland, MA: Sinauer Associates; 1996 pp. 407–514
    [Google Scholar]
  31. Cashion P, Holder-Franklin MA, McCully J, Franklin M. A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 1977; 81:461–466 [View Article][PubMed]
    [Google Scholar]
  32. De Ley J, Cattoir H, Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 1970; 12:133–142 [View Article][PubMed]
    [Google Scholar]
  33. Huss VA, Festl H, Schleifer KH. Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 1983; 4:184–192 [View Article][PubMed]
    [Google Scholar]
  34. Wayne L. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464
    [Google Scholar]
  35. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiology Today 2006; 33:152
    [Google Scholar]
  36. Meier-Kolthoff JP, Göker M, Spröer C, Klenk HP. When should a DDH experiment be mandatory in microbial taxonomy?. Arch Microbiol 2013; 195:413–418 [View Article][PubMed]
    [Google Scholar]
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