1887

Abstract

Three Gram-negative, non-spore-forming, rod-shaped and motile bacterial strains, designated MMS16-UL250, MMS16-UL253 and MMS16-UL482, were isolated from coastal seawater and subjected to taxonomic characterization. All isolates grew at 4–30 °C (optimum, 25 °C), at pH 6–10 (pH 7) and in the presence of up to 8 % NaCl (2.5–4.5 %). The 16S rRNA gene sequence similarities between the three isolates and Shewanella algicola St-6, the closest species, were 98.1–99.2 %, and those among the isolates were 98.5–99.0 %. In the phylogenetic tree, MMS16-UL250 formed a cluster with S. algicola St-6, but the DNA–DNA relatedness between the two strains was 28.8±1.5 %, thus confirming their separation at species level. The other two strains formed separate phylogenetic lines respectively. The main quinones for all strains were Q-7, Q-8, MK-7 and MMK-7, which is typical for Shewanella . The major polar lipids of all strains were phosphatidylglycerol and phosphatidylethanolamine, and the common major fatty acid was a summed feature consisting of C16 : 1ω7c and/or C16 : 1ω6c while the proportions varied among the three strains. The DNA G+C contents of the strains also varied between 42.1 and 43.7 mol%. Phenotypic properties distinguished each strain from S. algicola as well as from one another. Based on the polyphasic analysis, each strain is considered to represent a novel species of Shewanella , for which the names Shewanella saliphila sp. nov. (type strain, MMS16-UL250=KCTC 62131=JCM 32304), Shewanella ulleungensis sp. nov. (type strain, MMS16-UL253=KCTC 62130=JCM 32305) and Shewanella litoralis sp. nov. (type strain, MMS16-UL482=KCTC 62129=JCM 32306) are proposed.

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2018-07-20
2024-04-25
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References

  1. Ivanova EP, Gorshkova NM, Bowman JP, Lysenko AM, Zhukova NV et al. Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int J Syst Evol Microbiol 2004; 54:1083–1087 [View Article][PubMed]
    [Google Scholar]
  2. MacDonell MT, Colwell RR. Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 1985; 6:171–182 [View Article]
    [Google Scholar]
  3. Venkateswaran K, Moser DP, Dollhopf ME, Lies DP, Saffarini DA et al. Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 1999; 49:705–724 [View Article][PubMed]
    [Google Scholar]
  4. Chang HW, Roh SW, Kim KH, Nam YD, Jeon CO et al. Shewanella basaltis sp. nov., a marine bacterium isolated from black sand. Int J Syst Evol Microbiol 2008; 58:1907–1910 [View Article][PubMed]
    [Google Scholar]
  5. Bozal N, Montes MJ, Miñana-Galbis D, Manresa A, Mercadé E. Shewanella vesiculosa sp. nov., a psychrotolerant bacterium isolated from an Antarctic coastal area. Int J Syst Evol Microbiol 2009; 59:336–340 [View Article][PubMed]
    [Google Scholar]
  6. Kovacs N. Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 1956; 178:703 [View Article][PubMed]
    [Google Scholar]
  7. Gordon RE, Haynes WC, Pang CHN. The genus Bacillus. Handbook No. 427 Washington, DC: U.S. Department of Agriculture; 1973 pp. 109–126
    [Google Scholar]
  8. Kim MK, Kim TS, Joung Y, Han JH, Kim SB. Taibaiella soli sp. nov., isolated from pine forest soil. Int J Syst Evol Microbiol 2016; 66:3230–3234 [View Article][PubMed]
    [Google Scholar]
  9. Cowan ST, Steel K. Manual for the Identification of Medical Bacteria London: Cambridge University Press; 1965
    [Google Scholar]
  10. Kim TS, Han JH, Joung Y, Kim SB. Paenibacillus oenotherae sp. nov. and Paenibacillus hemerocallicola sp. nov., isolated from the roots of herbaceous plants. Int J Syst Evol Microbiol 2015; 65:2717–2725 [View Article][PubMed]
    [Google Scholar]
  11. Yamamoto S, Harayama S. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 1995; 61:1104–1109[PubMed]
    [Google Scholar]
  12. Jeon YS, Lee K, Park SC, Kim BS, Cho YJ et al. EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes. Int J Syst Evol Microbiol 2014; 64:689–691 [View Article][PubMed]
    [Google Scholar]
  13. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  14. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  15. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  16. Ronald E. New chromatography columns and accessories at the 2003 Pittsburgh conference, part I. LCGC North America 2003; 21
  17. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M. Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 1977; 27:104–117 [View Article]
    [Google Scholar]
  18. Gonzalez JM, Saiz-Jimenez C. A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 2002; 4:770–773[PubMed]
    [Google Scholar]
  19. Ezaki T, Hashimoto Y, Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 1989; 39:224–229 [View Article]
    [Google Scholar]
  20. Bozal N, Montes MJ, Tudela E, Jiménez F, Guinea J. Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int J Syst Evol Microbiol 2002; 52:195–205 [View Article][PubMed]
    [Google Scholar]
  21. Yoon JH, Kang KH, Oh TK, Park YH. Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. Int J Syst Evol Microbiol 2004; 54:487–491 [View Article][PubMed]
    [Google Scholar]
  22. Bowman JP, McCammon SA, Nichols DS, Skerratt JH, Rea SM et al. Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 1997; 47:1040–1047 [View Article][PubMed]
    [Google Scholar]
  23. Wayne LG, Moore WEC, Stackebrandt E, Kandler O, Colwell RR et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987; 37:463–464 [View Article]
    [Google Scholar]
  24. Kim KO, Shin KS, Kim MN, Shin KS, Labeda DP et al. Reassessment of the status of Streptomyces setonii and reclassification of Streptomyces fimicarius as a later synonym of Streptomyces setonii and Streptomyces albovinaceus as a later synonym of Streptomyces globisporus based on combined 16S rRNA/gyrB gene sequence analysis. Int J Syst Evol Microbiol 2012; 62:2978–2985 [View Article][PubMed]
    [Google Scholar]
  25. Colwell R, Grigorova R. Methods in Microbiology vol. 19 United States: Academic Press Inc; 1987
    [Google Scholar]
  26. Kim JY, Yoo HS, Lee DH, Park SH, Kim YJ et al. Shewanella algicola sp. nov., a marine bacterium isolated from brown algae. Int J Syst Evol Microbiol 2016; 66:2218–2224 [View Article][PubMed]
    [Google Scholar]
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