1887

Abstract

A strictly aerobic, haloalkali-tolerant, Gram-stain-positive, non-motile, rod-shaped bacterium, designated strain SMB4, was isolated from a water sample collected from Sambhar salt lake, Rajasthan, India. Growth occurred at 25–50 °C, 4–12 % (w/v) NaCl and pH of 5–9. Strain SMB4 was positive for β-galactosidase, oxidase, catalase and urease activities. The fatty acids were dominated by branched forms of fatty acids with iso- and anteiso-saturated fatty acids, with a high abundance of anteiso-C15 : 0, anteiso-C17 : 0 and C18 : 0. The cell-wall peptidoglycan of strain SMB4 contained meso-diaminopimelic acid, while the polar lipids included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, one unidentified phospholipid and three unidentified lipids. The DNA G+C content of strain SMB4 was 49.1 mol%. A blast sequence similarity search based on 16S rRNA gene sequence indicated that Salibacterium halochares , Salibacterium halotolerans and Salibacterium qingdaonense were the nearest phylogenetic neighbours, with a pair-wise sequence similarities of 98.4, 98.2 and 97.0 % respectively. Phylogenetic analysis showed that strain SMB4 was clustered with S. halochares and together clustered with S. halotolerans and S. qingdaonense. DNA–DNA hybridization of strain SMB4 with S. halochares DSM 21373, S. halotolerans S7 and S. quigdaonense DSM 21621 showed a relatedness values of only 39.8, 26.3 and 42.8 %, respectively. Based on its phenotypic characteristics and on phylogenetic inference, strain SMB4 represents a novel species of the genus Salibacterium , for which the name Salibacterium nitratireducens sp. nov. is proposed. The type strain is SMB4 (=MTCC 12633=KCTC 33876=JCM 32187).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.003021
2018-09-18
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/68/11/3506.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.003021&mimeType=html&fmt=ahah

References

  1. Vishnuvardhan Reddy S, Thirumala M, Sasikala C, Venkata Ramana C. Salibacterium halotolerans gen. nov., sp. nov., a bacterium isolated from a salt pan, reclassification of Bacillus qingdaonensis as Salibacterium qingdaonense comb. nov. and Bacillus halochares as Salibacterium halochares comb. nov. Int J Syst Evol Microbiol 2015; 65:4270–4275 [View Article][PubMed]
    [Google Scholar]
  2. Pappa A, Sánchez-Porro C, Lazoura P, Kallimanis A, Perisynakis A et al. Bacillus halochares sp. nov., a halophilic bacterium isolated from a solar saltern. Int J Syst Evol Microbiol 2010; 60:1432–1436 [View Article][PubMed]
    [Google Scholar]
  3. Wang QF, Li W, Liu YL, Cao HH, Li Z et al. Bacillus qingdaonensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a crude sea-salt sample collected near Qingdao in eastern China. Int J Syst Evol Microbiol 2007; 57:1143–1147 [View Article][PubMed]
    [Google Scholar]
  4. Vandamme P, Pot B, Gillis M, de Vos P, Kersters K et al. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 1996; 60:407–438[PubMed]
    [Google Scholar]
  5. Lane DJ. 16S/23S rRNA sequencing. In Stackebrandt E, Good Fellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics Chichester: Wiley; 1991 pp. 115–175
    [Google Scholar]
  6. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403–410 [View Article][PubMed]
    [Google Scholar]
  7. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  8. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  9. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  10. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article][PubMed]
    [Google Scholar]
  11. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed]
    [Google Scholar]
  12. Logan NA, Berge O, Bishop AH, Busse HJ, de Vos P et al. Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 2009; 59:2114–2121 [View Article][PubMed]
    [Google Scholar]
  13. Lányí B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1987; 19:1–67
    [Google Scholar]
  14. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
    [Google Scholar]
  15. Srinivas TN, Nageswara Rao SS, Vishnu Vardhan Reddy P, Pratibha MS, Sailaja B et al. Bacterial diversity and bioprospecting for cold-active lipases, amylases and proteases, from culturable bacteria of kongsfjorden and Ny-alesund, Svalbard, Arctic. Curr Microbiol 2009; 59:537–547 [View Article][PubMed]
    [Google Scholar]
  16. Anil Kumar P, Aravind R, Francis K, Bhumika V, Ritika C et al. Shivajiella indica gen. nov., sp. nov., a marine bacterium of the family "Cyclobacteriaceae" with nitrate reducing activity. Syst Appl Microbiol 2012; 35:320–325 [View Article][PubMed]
    [Google Scholar]
  17. Baek SH, Cui Y, Kim SC, Cui CH, Yin C et al. Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 2011; 61:1715–1719 [View Article][PubMed]
    [Google Scholar]
  18. Sasser M. Identification of bacteria through fatty acid analysis. In Klement Z, Rudolph K, Sands DC. (editors) Methods in Phytobacteriology Budapest: Akademiai Kiado, Hungry; 1990 pp. 199–204
    [Google Scholar]
  19. Komagata K, Suzuki K. Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–206
    [Google Scholar]
  20. Bligh EG, Dyer WJ. A rapid method of total lipid extraction and purification. Can J Biochem Physiol 1959; 37:911–917 [View Article][PubMed]
    [Google Scholar]
  21. Marmur J. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 1961; 3:208–IN1 [View Article]
    [Google Scholar]
  22. Sly LI, Blackall LL, Kraat PC, Tian-Shen T, Sangkhobol V. The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 1986; 5:139–156
    [Google Scholar]
  23. Loveland-Curtze J, Miteva VI, Brenchley JE. Evaluation of a new fluorimetric DNA–DNA hybridization method. Can J Microbiol 2011; 57:250–255 [View Article][PubMed]
    [Google Scholar]
  24. De Ley J, Cattoir H, Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 1970; 12:133–142 [View Article][PubMed]
    [Google Scholar]
  25. Gillis M, De Ley J, de Cleene M. The determination of molecular weight of bacterial genome DNA from renaturation rates. Eur J Biochem 1970; 12:143–153 [View Article][PubMed]
    [Google Scholar]
  26. Wayne LG, Moore WEC, Stackebrandt E, Kandler O, Colwell RR et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987; 37:463–464 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.003021
Loading
/content/journal/ijsem/10.1099/ijsem.0.003021
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error