1887

Abstract

A Gram-stain-positive, facultatively anaerobic, motile and rod-shaped bacterium, designated KNUC7312, was isolated from salt-accumulated rhizospheric soil in a pepper greenhouse in Miryang city, Republic of Korea. Cell growth of strain KNUC7312 occurred at 10–45 °C (optimum, 30 °C) and pH 7–12 (optimum, pH 7). In addition, this strain was able to tolerate 0–12 % NaCl (w/v) concentration (optimum, 0–1 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain KNUC7312 clustered together with other species of the genus Bacillus and was most closely related to Bacillus humi DSM 16318 (98.0 %). The predominant respiratory quinone was menaquinone-7 (MK-7). The major cellular fatty acids were anteiso C15 : 0, iso-C15 : 0 and iso-C14 : 0. The polar lipid profile contained the major components diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and two unidentified aminolipids. The cell-wall peptidoglycan contained meso-diaminopimelic acid as the major diagnostic diamino acid. Strain KNUC7312 showed a low DNA–DNA relatedness value (47.36 %) with B. humi DSM 16318, which supported that this strain represents a novel Bacillus species. On the basis of phenotypic, chemotaxonomic and phylogenetic evidence, strain KNUC7312 represents a novel species within the genera Bacillus . The name Bacillus salildurans sp. nov. is proposed. The type strain is KNUC7312 (KCTC 33852=CGMCC 1.13629).

Keyword(s): Bacillus and pepper rhizosphere
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2018-11-14
2024-04-25
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References

  1. Jeon CO, Lim JM, Lee JM, Xu LH, Jiang CL et al. Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 2005; 55:1891–1896 [View Article][PubMed]
    [Google Scholar]
  2. Shida O, Takagi H, Kadowaki K, Komagata K. Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Bacteriol 1996; 46:939–946 [View Article][PubMed]
    [Google Scholar]
  3. Glaeser SP, Dott W, Busse HJ, Kämpfer P. Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus. Int J Syst Evol Microbiol 2013; 63:2934–2944 [View Article][PubMed]
    [Google Scholar]
  4. Nazina TN, Tourova TP, Poltaraus AB, Novikova EV, Grigoryan AA et al. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G.thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 2001; 51:433–446 [View Article][PubMed]
    [Google Scholar]
  5. Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH et al. Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 . as mMrinibacillus marinus gen nov., comb. nov. Int J Syst Evol Microbiol 2001; 51:2087–2093 [View Article][PubMed]
    [Google Scholar]
  6. Ash C, Priest FG, Collins MD. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 1993; 64:253–260[PubMed]
    [Google Scholar]
  7. Krishnamurthi S, Ruckmani A, Pukall R, Chakrabarti T. Psychrobacillus gen. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov. Syst Appl Microbiol 2010; 33:367–373 [View Article][PubMed]
    [Google Scholar]
  8. Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH et al. Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th. Int J Syst Evol Microbiol 2001; 51:1079–1086 [View Article][PubMed]
    [Google Scholar]
  9. Ahmed I, Yokota A, Yamazoe A, Fujiwara T. Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 2007; 57:1117–1125 [View Article][PubMed]
    [Google Scholar]
  10. Fortina MG, Pukall R, Schumann P, Mora D, Parini C et al. Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov. Int J Syst Evol Microbiol 2001; 51:447–455 [View Article][PubMed]
    [Google Scholar]
  11. Zhou Y, Xu J, Xu L, Tindall BJ. Falsibacillus pallidus to replace the homonym Bacillus pallidus Zhou et al. 2008. Int J Syst Evol Microbiol 2009; 59:3176–3180 [View Article][PubMed]
    [Google Scholar]
  12. Heyndrickx M, Lebbe L, Kersters K, de Vos P, Forsyth G et al. Virgibacillus: a new genus to accommodate bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 1998; 48:99–106
    [Google Scholar]
  13. Logan NA. Bacillus. In Bergey’s Manual of Systematics of Archaea and Bacteria 2015 pp. 1–163
    [Google Scholar]
  14. Kloepper JW, Ryu CM, Zhang S. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology 2004; 94:1259–1266 [View Article][PubMed]
    [Google Scholar]
  15. Talboys PJ, Owen DW, Healey JR, Withers PJ, Jones DL. Auxin secretion by Bacillus amyloliquefaciens FZB42 both stimulates root exudation and limits phosphorus uptake in Triticum aestivium. BMC Plant Biol 2014; 14:51 [View Article][PubMed]
    [Google Scholar]
  16. Son JS, Sumayo M, Hwang YJ, Kim BS, Ghim SY. Screening of plant growth-promoting rhizobacteria as elicitor of systemic resistance against gray leaf spot disease in pepper. Appl Soil Ecol 2014; 73:1–8
    [Google Scholar]
  17. Xie S, Jiang H, Ding T, Xu Q, Chai W et al. Bacillus amyloliquefaciens FZB42 represses plant miR846 to induce systemic resistance via a jasmonic acid-dependent signalling pathway. Mol Plant Pathol 2018; 19:1612–1623 [View Article][PubMed]
    [Google Scholar]
  18. García-Gutiérrez L, Zeriouh H, Romero D, Cubero J, de Vicente A et al. The antagonistic strain Bacillus subtilis UMAF6639 also confers protection to melon plants against cucurbit powdery mildew by activation of jasmonate- and salicylic acid-dependent defence responses. Microb Biotechnol 2013; 6:264–274 [View Article][PubMed]
    [Google Scholar]
  19. Ryu CM, Farag MA, Hu CH, Reddy MS, Kloepper JW et al. Bacterial volatiles induce systemic resistance in Arabidopsis. Plant Physiol 2004; 134:1017–1026 [View Article][PubMed]
    [Google Scholar]
  20. Hahm MS, Son JS, Kim BS, Ghim SY. Comparative study of rhizobacterial communities in pepper greenhouses and examination of the effects of salt accumulation under different cropping systems. Arch Microbiol 2017; 199:303–315 [View Article][PubMed]
    [Google Scholar]
  21. Heyrman J, Rodríguez-Díaz M, Devos J, Felske A, Logan NA et al. Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. Int J Syst Evol Microbiol 2005; 55:111–117 [View Article][PubMed]
    [Google Scholar]
  22. Dunlap CA, Kwon SW, Rooney AP, Kim SJ. Bacillus paralicheniformis sp. nov., isolated from fermented soybean paste. Int J Syst Evol Microbiol 2015; 65:3487–3492 [View Article][PubMed]
    [Google Scholar]
  23. Wieser M, Worliczek H, Kämpfer P, Busse HJ. Bacillus herbersteinensis sp. nov. Int J Syst Evol Microbiol 2005; 55:2119–2123 [View Article][PubMed]
    [Google Scholar]
  24. Zhou YX, Liu GH, Liu B, Chen GJ, du ZJ. Bacillus mesophilus sp. nov., an alginate-degrading bacterium isolated from a soil sample collected from an abandoned marine solar saltern. Antonie van Leeuwenhoek 2016; 109:937–943 [View Article][PubMed]
    [Google Scholar]
  25. Balcázar JL, Pintado J, Planas M. Bacillus galliciensis sp. nov., isolated from faeces of wild seahorses (Hippocampus guttulatus). Int J Syst Evol Microbiol 2010; 60:892–895 [View Article][PubMed]
    [Google Scholar]
  26. Kosowski K, Schmidt M, Pukall R, Hause G, Kämpfer P et al. Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor. Int J Syst Evol Microbiol 2014; 64:88–94 [View Article][PubMed]
    [Google Scholar]
  27. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article][PubMed]
    [Google Scholar]
  28. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999; 41:95–98
    [Google Scholar]
  29. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  30. Kluge AG, Farris JS. Quantitative phyletics and the evolution of anurans. Syst Biol 1969; 18:1–32
    [Google Scholar]
  31. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376[PubMed]
    [Google Scholar]
  32. Felsenstein J. PHYLIP (Phylogeny inference package) version 3.696 2008 http://evolution.genetics.washington.edu/phylip.html
    [Google Scholar]
  33. Sambrook J, Russell DW. Molecular Cloning: A Laboratory Manual New York: Cold Spring Harbor Laboratory Press; 2001
    [Google Scholar]
  34. Sung HR, Yoon JH, Ghim SY. Shewanella dokdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2012; 62:1636–1643 [View Article][PubMed]
    [Google Scholar]
  35. Ezaki T, Hashimoto Y, Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Evol Microbiol 1989; 39:224–229
    [Google Scholar]
  36. Komagata K, Suzuki K-I. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207
    [Google Scholar]
  37. Shin YK, Lee J, Chun C, Kim H, Park Y. Notes: isoprenoid quinone profiles of the Leclercia adecarboxylata KCTC 1036T. J Microbiol Biotechnol 1996; 6:68–69
    [Google Scholar]
  38. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241
    [Google Scholar]
  39. Kawamoto I, Oka T, Nara T. Cell wall composition of Micromonospora olivoasterospora, Micromonospora sagamiensis, and related organisms. J Bacteriol 1981; 146:527–534[PubMed]
    [Google Scholar]
  40. Schumann P. 5- Peptidoglycan structure. Methods Microbiol 2011; 38:101–129
    [Google Scholar]
  41. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Newark, DE: Microbial ID; 1990
    [Google Scholar]
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