1887

Abstract

A novel strain, designated as MX6 was isolated from Meighan wetland, in the centre of Iran. The cells were Gram-stain-positive, motile, coccoid to rod-shaped, oxidase- and catalase-positive. The strain grew optimally at 35 °C, 3 % (w/v) NaCl and pH 7–7.5. A polyphasic taxonomic study was undertaken in order to characterize the strain in detail. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that MX6 represented a member of the phylum Firmicutes , family Planococcaceae , genus Planomicrobium , and showed the highest similarity with Planomicrobium flavidum ISL-41 (98.2 %) and Planomicrobium psychrophilum CMC 53or (98.0 %). The main polar lipids of MX6 consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and seven unidentified phospholipids and its DNA G+C content was 45.5 mol%. Major cellular fatty acids were anteiso-C15 : 0, C16 : 1ω7c alcohol, iso-C14 : 0, iso-C15 : 0 and iso-C16 : 0 and the predominant respiratory quinone was Q-8 (62 %). Experimental DNA–DNA hybridization between MX6 and Planomicrobium flavidum IBRC-M 11047 was 20 %, supporting the differential taxonomic status of MX6 as representing a different taxon. All these data indicate that MX6 represents a novel species of the genus Planomicrobium , for which the name Planomicrobium iranicum sp. nov. is proposed. The type strain is MX6 (=IBRC M 10928=LMG 28548).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.003332
2019-03-12
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/69/5/1433.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.003332&mimeType=html&fmt=ahah

References

  1. Yoon JH, Kang SS, Lee KC, Lee ES, Kho YH et al. Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int J Syst Evol Microbiol 2001; 51:1511–1520 [View Article][PubMed]
    [Google Scholar]
  2. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464
    [Google Scholar]
  3. Nakagawa Y, Sakane T, Yokota A. Emendation of the genus Planococcus and transfer of Flavobacterium okeanokoites Zobell and Upham 1944 to the genus Planococcus as Planococcus okeanokoites comb. nov. Int J Syst Bacteriol 1996; 46:866–870 [View Article][PubMed]
    [Google Scholar]
  4. Junge K, Gosink JJ, Hoppe HG, Staley JT. Arthrobacter, Brachybacterium and Planococcus isolates identified from antarctic sea ice brine. Description of Planococcus mcmeekinii, sp. nov. Syst Appl Microbiol 1998; 21:306–314 [View Article][PubMed]
    [Google Scholar]
  5. Dai X, Wang YN, Wang BJ, Liu SJ, Zhou YG. Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. Int J Syst Evol Microbiol 2005; 55:699–702 [View Article][PubMed]
    [Google Scholar]
  6. Engelhardt MA, Daly K, Swannell RP, Head IM. Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment, and description of Planococcus alkanoclasticus sp. nov. J Appl Microbiol 2001; 90:237–247 [View Article][PubMed]
    [Google Scholar]
  7. Reddy GS, Prakash JS, Vairamani M, Prabhakar S, Matsumoto GI et al. Planococcus antarcticus and Planococcus psychrophilus sp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 2002; 6:253–261 [View Article][PubMed]
    [Google Scholar]
  8. Jung YT, Kang SJ, Oh TK, Yoon JH, Kim BH. Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov. Int J Syst Evol Microbiol 2009; 59:2929–2933 [View Article][PubMed]
    [Google Scholar]
  9. Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S et al. Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India. Int J Syst Evol Microbiol 2005; 55:91–94 [View Article][PubMed]
    [Google Scholar]
  10. Zhang DC, Liu HC, Xin YH, Yu Y, Zhou PJ et al. Planomicrobium glaciei sp. nov., a psychrotolerant bacterium isolated from a glacier. Int J Syst Evol Microbiol 2009; 59:1387–1390 [View Article][PubMed]
    [Google Scholar]
  11. Luo X, Zhang J, Li D, Xin Y, Xin D et al. Planomicrobium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 2014; 64:2700–2705 [View Article][PubMed]
    [Google Scholar]
  12. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  13. Krieg NR, Padgett PJ. Phenotypic and physiological characterization methods. In Rainey F, Oren A. (editors) Methods in Microbiology, Taxonomy of Prokaryotes vol. 38 Academic press. Elsevier; 2011 pp. 15–61
    [Google Scholar]
  14. Leifson E. Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 1963; 85:1183–1184[PubMed]
    [Google Scholar]
  15. Nikou MM, Ramezani M, Amoozegar MA, Rasouli M, Fazeli SA et al. Salininema proteolyticum gen. nov., sp. nov., a halophilic rare actinomycete isolated from wetland soil, and emended description of the family Glycomycetaceae. Int J Syst Evol Microbiol 2015; 65:3727–3733 [View Article][PubMed]
    [Google Scholar]
  16. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  17. Rzhetsky A, Nei M. A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 1992; 9:945–967
    [Google Scholar]
  18. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
    [Google Scholar]
  19. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  20. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  21. Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 1977; 100:221–230 [View Article][PubMed]
    [Google Scholar]
  22. Cashion P, Holder-Franklin MA, McCully J, Franklin M. A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 1977; 81:461–466 [View Article][PubMed]
    [Google Scholar]
  23. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989; 39:159–167 [View Article]
    [Google Scholar]
  24. de Ley J, Cattoir H, Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 1970; 12:133–142 [View Article][PubMed]
    [Google Scholar]
  25. Huss VA, Festl H, Schleifer KH. Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 1983; 4:184–192 [View Article][PubMed]
    [Google Scholar]
  26. Meier-Kolthoff JP, Göker M, Spröer C, Klenk HP. When should a DDH experiment be mandatory in microbial taxonomy?. Arch Microbiol 2013; 195:413–418 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.003332
Loading
/content/journal/ijsem/10.1099/ijsem.0.003332
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error