1887

Abstract

Two actinobacterial strains, CPCC 203464 and CPCC 203448, isolated from surface-sterilized stems of medicinal plants were subjected to a polyphasic taxonomic study. These two aerobic organisms formed pale yellow colonies on tryptic soy agar (TSA). Cells were Gram-stain-positive, non-acid-fast, non-motile, rod- or coccoid-like elements. Comparative 16S rRNA gene sequence analysis indicated that strains CPCC 203464 and CPCC 203448 were most closely related to the type strains of the species of the genus Chemotaxonomic properties such as containing diaminopimelic acid in the cell wall, arabinose, galactose and ribose being the whole-cell hydrolysate sugars, phosphatidylethanolamine (PE), diphosphatidylglycerol (DPG), phosphatidylglycerol (PG) and phosphatidylinositol (PI) as the phospholipids, and C, 10-methyl C, Cω9, Cω7 and/or iso-C 2-OH as major fatty acids supported the affiliation of strains CPCC 203464 and CPCC 203448 to the genus . The DNA–DNA hybridization values in combination with differentiating chemotaxonomic and physiological characteristics strongly suggested that these two isolates should be classified as representatives of a novel species of the genus . The name sp. nov. is proposed, with strain CPCC 203464 ( = DSM 45741 = KCTC 29118) as the type strain.

Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 81173026 and 31170041)
  • National Infrastructure of Microbial Resources (Award NIMR-2012-3)
  • National S&T Major Special Project on Major New Drug Innovation (Award 2012ZX09301002-003 and 2012ZX09301002-001)
  • Special Fund for Health-scientific Research in the Public Interest (Award 201002021)
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2013-11-01
2024-04-28
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References

  1. Collins M. D., Goodfellow M., Minnikin D. E. ( 1980 ). Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. . J Gen Microbiol 118, 2937.[PubMed]
    [Google Scholar]
  2. De Ley J., Cattoir H., Reynaerts A. ( 1970 ). The quantitative measurement of DNA hybridization from renaturation rates. . Eur J Biochem 12, 133142. [View Article] [PubMed]
    [Google Scholar]
  3. Embley T. M., Goodfellow M., Minnikin D. E., O’Donnell A. G. ( 1984 ). Lipid and wall amino acid composition in the classification of Rothia dentocariosa . . Zentralbl Bakteriol Mikrobiol Hyg [A] 257, 285295.[PubMed]
    [Google Scholar]
  4. Groth I., Schumann P., Rainey F. A., Martin K., Schuetze B., Augsten K. ( 1997 ). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. . Int J Syst Bacteriol 47, 11291133. [View Article] [PubMed]
    [Google Scholar]
  5. Isik K., Chun J., Hah Y. C., Goodfellow M. ( 1999 ). Nocardia salmonicida nom. rev., a fish pathogen. . Int J Syst Bacteriol 49, 833837. [View Article] [PubMed]
    [Google Scholar]
  6. Iwi G., Millard R. K., Palmer A. M., Preece A. W., Saunders M. ( 1999 ). Bootstrap resampling: a powerful method of assessing confidence intervals for doses from experimental data. . Phys Med Biol 44, N55N62. [View Article] [PubMed]
    [Google Scholar]
  7. Jones A. L., Payne G. D., Goodfellow M. ( 2010 ). Williamsia faeni sp. nov., an actinomycete isolated from a hay meadow. . Int J Syst Evol Microbiol 60, 25482551. [View Article] [PubMed]
    [Google Scholar]
  8. Kämpfer P., Andersson M. A., Rainey F. A., Kroppenstedt R. M., Salkinoja-Salonen M. ( 1999 ). Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children’s day care centre. . Int J Syst Bacteriol 49, 681687. [View Article] [PubMed]
    [Google Scholar]
  9. Kämpfer P., Wellner S., Lohse K., Lodders N., Martin K. ( 2011 ). Williamsia phyllosphaerae sp. nov., isolated from the surface of Trifolium repens leaves. . Int J Syst Evol Microbiol 61, 27022705. [View Article] [PubMed]
    [Google Scholar]
  10. Kellogg J. A., Bankert D. A., Withers G. S., Sweimler W., Kiehn T. E., Pfyffer G. E. ( 2001 ). Application of the Sherlock Mycobacteria Identification System using high-performance liquid chromatography in a clinical laboratory. . J Clin Microbiol 39, 964970. [View Article] [PubMed]
    [Google Scholar]
  11. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  12. Krejcí E., Kroppenstedt R. M. ( 2006 ). Differentiation of species combined into the Burkholderia cepacia complex and related taxa on the basis of their fatty acid patterns. . J Clin Microbiol 44, 11591164. [View Article] [PubMed]
    [Google Scholar]
  13. Li W. J., Xu P., Schumann P., Zhang Y. Q., Pukall R., Xu L. H., Stackebrandt E., Jiang C. L. ( 2007 ). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia . . Int J Syst Evol Microbiol 57, 14241428. [View Article] [PubMed]
    [Google Scholar]
  14. Marmur J., Doty P. ( 1962 ). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. . J Mol Biol 5, 109118. [View Article] [PubMed]
    [Google Scholar]
  15. Pathom-aree W., Nogi Y., Sutcliffe I. C., Ward A. C., Horikoshi K., Bull A. T., Goodfellow M. ( 2006 ). Williamsia marianensis sp. nov., a novel actinomycete isolated from the Mariana Trench. . Int J Syst Evol Microbiol 56, 11231126. [View Article] [PubMed]
    [Google Scholar]
  16. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  17. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE:: MIDI Inc;.
    [Google Scholar]
  18. Sazak A., Sahin N. ( 2012 ). Williamsia limnetica sp. nov., isolated from a limnetic lake sediment. . Int J Syst Evol Microbiol 62, 14141418. [View Article] [PubMed]
    [Google Scholar]
  19. Shirling E. B., Gottlieb D. ( 1966 ). Methods for characterization of Streptomyces species. . Int J Syst Bacteriol 16, 313340. [View Article]
    [Google Scholar]
  20. Stach J. E., Maldonado L. A., Ward A. C., Bull A. T., Goodfellow M. ( 2004 ). Williamsia maris sp. nov., a novel actinomycete isolated from the Sea of Japan. . Int J Syst Evol Microbiol 54, 191194. [View Article] [PubMed]
    [Google Scholar]
  21. Staneck J. L., Roberts G. D. ( 1974 ). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. . Appl Microbiol 28, 226231.[PubMed]
    [Google Scholar]
  22. Tamura K., Dudley J., Nei M., Kumar S. ( 2007 ). mega4: molecular evolutionary genetics analysis (mega) software version 4.0. . Mol Biol Evol 24, 15961599. [View Article] [PubMed]
    [Google Scholar]
  23. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 48764882. [View Article] [PubMed]
    [Google Scholar]
  24. Wayne L. G. ( 1988 ). International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. . Zentralbl Bakteriol Mikrobiol Hyg [A] 268, 433434.[PubMed]
    [Google Scholar]
  25. Williams S. T., Goodfellow M., Alderson G., Wellington E. M., Sneath P. H., Sackin M. J. ( 1983 ). Numerical classification of Streptomyces and related genera. . J Gen Microbiol 129, 17431813.[PubMed]
    [Google Scholar]
  26. Yassin A. F., Hupfer H. ( 2006 ). Williamsia deligens sp. nov., isolated from human blood. . Int J Syst Evol Microbiol 56, 193197. [View Article] [PubMed]
    [Google Scholar]
  27. Yassin A. F., Young C. C., Lai W. A., Hupfer H., Arun A. B., Shen F. T., Rekha P. D., Ho M. J. ( 2007 ). Williamsia serinedens sp. nov., isolated from an oil-contaminated soil. . Int J Syst Evol Microbiol 57, 558561. [View Article] [PubMed]
    [Google Scholar]
  28. Yuan L. J., Zhang Y. Q., Guan Y., Wei Y. Z., Li Q. P., Yu L. Y., Li W. J., Zhang Y. Q. ( 2008 ). Saccharopolyspora antimicrobica sp. nov., an actinomycete from soil. . Int J Syst Evol Microbiol 58, 11801185. [View Article] [PubMed]
    [Google Scholar]
  29. Zhang Y. Q., Yu L. Y., Wang D., Liu H. Y., Sun C. H., Jiang W., Zhang Y. Q., Li W. J. ( 2008 ). Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample. . Int J Syst Evol Microbiol 58, 20702074. [View Article] [PubMed]
    [Google Scholar]
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