- Home
- Publications
- International Journal of Systematic and Evolutionary Microbiology
- Volume 66, Issue 1
- Article

f Pseudorhodobacter collinsensis sp. nov., isolated from a till sample of an icecap front
- Authors: Yumin Zhang1 , Fan Jiang1 , Xulu Chang1 , Xia Qiu1 , Lvzhi Ren1 , Zhihao Qu1 , Sangsang Deng1 , Xuyang Da1 , Wenjing Kan1 , Myongchol Kim1 ,2 , Chengxiang Fang1 , Fang Peng1 ,3
-
- VIEW AFFILIATIONS
-
1 1 China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China 2 2 College of Life Sciences, Kim II Sung University, Pyongyang, DPR Korea 3 3 Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, Wuhan 430072, PR China
- Correspondence Fang Peng [email protected]
- First Published Online: 01 January 2016, International Journal of Systematic and Evolutionary Microbiology 66: 178-183, doi: 10.1099/ijsem.0.000693
- Subject: NEW TAXA - Proteobacteria
- Cover date:




Pseudorhodobacter collinsensis sp. nov., isolated from a till sample of an icecap front, Page 1 of 1
< Previous page | Next page > /docserver/preview/fulltext/ijsem/66/1/178_ijsem000693-1.gif
-
A Gram-stain-negative, rod-shaped, aerobic and non-motile strain, designated 4-T-34T, was isolated from a till sample of Collins icecap front, Antarctica, and its taxonomic position was investigated by genotypic, phenotypic and chemotaxonomic analysis. The isolate grew at 4–30 °C (optimum 20–25 °C), at pH 6.0–10.0 and with 0–1.0 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain 4-T-34T belonged to the genus Pseudorhodobacter, with the closest relatives being Pseudorhodobacter wandonensis WT-MW11T (96.9 % 16S rRNA gene sequence similarity), Pseudorhodobacter antarcticus ZS3-33T (96.8 %), Pseudorhodobacter ferrugineus IAM 12616T (96.5 %) and Pseudorhodobacter aquimaris HDW-19T (95.4 %). Strain 4-T-34T contained Q-10 as the only ubiquinone and C18 : 1ω7c as the major fatty acid. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, two unidentified aminophospholipids and two unidentified phospholipids. The DNA G+C content of strain 4-T-34T was 61 mol%. On the basis of phylogenetic, physiological and chemotaxonomic data, strain 4-T-34T is considered to represent a novel species of the genus Pseudorhodobacter, for which the name Pseudorhodobacter collinsensis sp. nov. is proposed. The type strain is 4-T-34T ( = CCTCC AB 2014005T = LMG 28256T).
-
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 4-T-34T is KM978076.
-
Three supplementary figures are available with the online Supplementary Material.
© 2015 IUMS | Published by the Microbiology Society
-
Bauer A. W. , Kirby W. M. , Sherris J. C. , Turck M. . ( 1966;). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45: 493––496 [PubMed].
-
Bowman J. P. . ( 2000;). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50: 1861––1868 [CrossRef] [PubMed].
-
Chen C.-X. , Zhang X.-Y. , Liu C. , Yu Y. , Liu A. , Li G.-W. , Li H. , Chen X.-L. , Chen B. , other authors . ( 2013;). Pseudorhodobacter antarcticus sp nov., isolated from Antarctic intertidal sandy sediment, and emended description of the genus Pseudorhodobacter Uchino et al. 2002 emend. Jung et al. 2012. Int J Syst Evol Microbiol 63: 849––854 [CrossRef].
-
Cowan S. T. . ( 1965;). Development of coding schemes for microbial taxonomy. Adv Appl Microbiol 7: 139––167 [CrossRef] [PubMed].
-
Doetsch R. N. . ( 1981;). Determinative methods of light microscopy. . In Manual of Methods for General Bacteriology, pp. 21––33. Edited by Gerhardt P. , Murray R. G. E. , Costilow R. N. , Nester E. W. , Wood W. A. , Krieg N. R. , Phillips G. H. . Washington, DC: American Society for Microbiology;.
-
Felsenstein J. . ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783––791 [CrossRef].
-
Jung Y.-T. , Oh K.-H. , Oh T.-K. , Yoon J.-H. . ( 2012;). Pseudorhodobacter aquimaris sp. nov., isolated from seawater, and emended description of the genus Pseudorhodobacter Uchino et al. 2002. Int J Syst Evol Microbiol 62: 100––105 [CrossRef] [PubMed].
-
Kim O. S. , Cho Y. J. , Lee K. , Yoon S. H. , Kim M. , Na H. , Park S. C. , Jeon Y. S. , Lee J. H. , other authors . ( 2012;). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716––721 [CrossRef] [PubMed].
-
Kovacs N. . ( 1956;). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178: 703 [CrossRef] [PubMed].
-
Lee M. H. , Lee S. Y. , Jung Y. T. , Park S. , Yoon J. H. . ( 2013;). Pseudorhodobacter wandonensis sp. nov., isolated from wood falls, and emended description of the genus Pseudorhodobacter . Int J Syst Evol Microbiol 63: 1479––1484 [CrossRef] [PubMed].
-
Martens T. , Heidorn T. , Pukall R. , Simon M. , Tindall B. J. , Brinkhoff T. . ( 2006;). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera . Int J Syst Evol Microbiol 56: 1293––1304 [CrossRef] [PubMed].
-
Mesbah M. , Whitman W. B. . ( 1989;). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479: 297––306 [CrossRef] [PubMed].
-
Reichenbach H. . ( 1992;). The order Cytophagales . . In The Prokaryotes, 2nd edn, vol. 4, pp. 3631––3675. Edited by Balows A. , Trüper H. G. , Dworkin M. , Harder W. , Schleifer K. H. . New York: Springer; [CrossRef].
-
Rüger H. J. , Höfle M. G. . ( 1992;). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42: 133––143 [CrossRef] [PubMed].
-
Rzhetsky A. , Nei M. . ( 1992;). Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. J Mol Evol 35: 367––375 [CrossRef] [PubMed].
-
Saitou N. , Nei M. . ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406––425 [PubMed].
-
Sasser M. . ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;.
-
Stackebrandt E. , Goebel B. M. . ( 1994;). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846––849.[CrossRef]
-
Tamura K. , Nei M. . ( 1993;). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512––526 [PubMed].
-
Tamura K. , Peterson D. , Peterson N. , Stecher G. , Nei M. , Kumar S. . ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731––2739 [CrossRef] [PubMed].
-
Tindall B. J. . ( 1990;). Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66: 199––202 [CrossRef].
-
Tresner H. D. , Danga F. . ( 1958;). Hydrogen sulfide production by Streptomyces as a criterion for species differentiation. J Bacteriol 76: 239––244 [PubMed].
-
Uchino Y. , Hamada T. , Yokota A. . ( 2002;). Proposal of Pseudorhodobacter ferrugineus gen nov, comb nov, for a non-photosynthetic marine bacterium, Agrobacterium ferrugineum, related to the genus Rhodobacter . J Gen Appl Microbiol 48: 309––319 [CrossRef] [PubMed].
-
Wilson K. H. , Blitchington R. B. , Greene R. C. . ( 1990;). Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J Clin Microbiol 28: 1942––1946 [PubMed].
-
Xie C. H. , Yokota A. . ( 2003;). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49: 345––349 [CrossRef] [PubMed].

Supplementary Data
Data loading....

Article metrics loading...

Full text loading...
Author and Article Information
-
This Journal
/content/journal/ijsem/10.1099/ijsem.0.000693dcterms_title,dcterms_subject,pub_serialTitlepub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
Other Society Journals
/content/journal/ijsem/10.1099/ijsem.0.000693dcterms_title,dcterms_subject-pub_serialIdent:journal/ijsem AND -contentType:BlogPost104 -
PubMed
-
Google Scholar
Figure data loading....