1887
  1. Home
  2. Publications
  3. International Journal of Systematic and Evolutionary Microbiology
  4. Volume 66, Issue 1
  5. Article

f sp. nov., isolated from lichen

PDF
733.38 Kb
HTML
60.24 Kb
  • Cover date:
Preview this:
Free Preview thumbnail Magnify
Zoom in
Zoomout

sp. nov., isolated from lichen, Page 1 of 1

| /docserver/preview/fulltext/ijsem/66/1/468_ijsem000746-1.gif

  • A novel species of the genus , strain LDG1-22, for which we propose the name sp. nov., was isolated from a lichen sample collected from tree bark in Thailand. The taxonomic position of the species has been described based on a polyphasic approach. Strain LDG1-22 produced irregular sporangia on agar media. It contained -diaminopimelic acid in the cell-wall peptidoglycan. The major menaquinone was MK-9(H); the polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and phosphatidylglycerol. Whole-cell hydrolysates contained ribose, glucose, mannose and small amounts of arabinose and xylose. The major cellular fatty acids were anteiso-C (31.2 %) and iso-C (14.2 %). Mycolic acids were absent. The G+C content was 73.6 %. 16S rRNA gene sequence analysis of strain LDG1-22 showed highest similarity (98.8 %) to DSM 45797 and it clustered with JCM 3264 and JCM 3121 in phylogenetic tree analysis. On the basis of the phenotypic characteristics and DNA–DNA relatedness, strain LDG1-22 could be distinguished from related species of the genus and so represents a novel species of this genus. The type strain of sp. nov. is LDG1-22 ( = JCM 30485 = TISTR 2343 = PCU 344).

  • The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain LDG1-22 is LC033899

  • Three supplementary figures and one supplementary table are available with the online Supplementary Material.

  • Abbreviations:
    LC-MS liquid chromatography-mass spectrometry.

© 2015 IUMS | Published by the Microbiology Society

  • Arai T. . ( 1975;). Culture Media for Actinomycetes Tokyo, Japan: The Society for Actinomycetes;.
     [Google Scholar]
  • Aretz W. , Meiwes J. , Seibert G. , Vobis G. , Wink J. . ( 2000;). Friulimicins: novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. I. Taxonomic studies of the producing microorganism and fermentation. J Antibiot (Tokyo) 53: 807––815 [CrossRef] [PubMed].
     [Google Scholar]
  • Collins M. D. , Pirouz T. , Goodfellow M. , Minnikin D. E. . ( 1977;). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100: 221––230 [CrossRef] [PubMed].
     [Google Scholar]
  • Coronelli C. , White R. J. , Lancini G. C. , Parenti F. . ( 1975;). Lipiarmycin, a new antibiotic from Actinoplanes. II. Isolation, chemical, biological and biochemical characterization. J Antibiot (Tokyo) 28: 253––259 [CrossRef] [PubMed].
     [Google Scholar]
  • Couch J. N. . ( 1950;). Actinoplanes, a new genus of the Actinomycetales . J Elisha Mitchell Sci Soc 66: 87––92.
     [Google Scholar]
  • Couch J. N. . ( 1963;). Some new genera and species of the Actinoplanaceae . J Elisha Mitchell Sci Soc 79: 53––70.
     [Google Scholar]
  • Ezaki T. , Hashimoto Y. , Yabuuchi E. . ( 1989;). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39: 224––229 [CrossRef].
     [Google Scholar]
  • Felsenstein J. . ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368––376 [CrossRef] [PubMed].
     [Google Scholar]
  • Felsenstein J. . ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783––791 [CrossRef].
     [Google Scholar]
  • Fitch W. M. . ( 1971;). Toward defining the course of evolution: minimum change for specific tree topology. Syst Zool 20: 406––416 [CrossRef].
     [Google Scholar]
  • Gordon R. E. , Barnett D. A. , Handerhan J. E. , Pang C. H. N. . ( 1974;). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24: 54––63 [CrossRef].
     [Google Scholar]
  • Hayakawa M. , Nonomura H. . ( 1987;). Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65: 501––509 [CrossRef].
     [Google Scholar]
  • Inahashi Y. , Matsumoto A. , Danbara H. , O¯mura S. , Takahashi Y. . ( 2010;). Phytohabitans suffuscus gen. nov., sp. nov., an actinomycete of the family Micromonosporaceae isolated from plant roots. Int J Syst Evol Microbiol 60: 2652––2658 [CrossRef] [PubMed].
     [Google Scholar]
  • Kimura M. . ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111––120 [CrossRef] [PubMed].
     [Google Scholar]
  • Li B. , Xie C. , Yokota A. . ( 2007;). Nocardioides exalbidus sp. nov., a novel actinomycete isolated from lichen in Izu-Oshima island, Japan. Actinomycetologica 21: 22––26 [CrossRef].
     [Google Scholar]
  • Matsumoto A. , Takahashi Y. , Kudo T. , Seino A. , Iwai Y. , Omura S. . ( 2000;). Actinoplanes capillaceus sp. nov., a new species of the genus Actinoplanes . Antonie van Leeuwenhoek 78: 107––115 [CrossRef] [PubMed].
     [Google Scholar]
  • Minnikin D. E. , O'Donnell A. G. , Goodfellow M. , Alderson G. , Athalye M. , Schaal A. , Parlett J. H. . ( 1984;). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2: 233––241 [CrossRef].
     [Google Scholar]
  • Parenti F. , Coronelli C. . ( 1979;). Members of the genus Actinoplanes and their antibiotics. Annu Rev Microbiol 33: 389––411 [CrossRef] [PubMed].
     [Google Scholar]
  • Parte A. C. . ( 2014;). LPSN—list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 42: (D1), D613––D616 [CrossRef] [PubMed].
     [Google Scholar]
  • Saito H. , Miura K. I. . ( 1963;). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72: 619––629 [CrossRef] [PubMed].
     [Google Scholar]
  • Saitou N. , Nei M. . ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406––425 [PubMed].
     [Google Scholar]
  • Sasser M. . ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;.
     [Google Scholar]
  • Shirling E. B. , Gottlieb D. . ( 1966;). Method for characterization of Streptomyces species. Int J Syst Bacteriol 16: 313––340 [CrossRef].
     [Google Scholar]
  • Somma S. , Gastaldo L. , Corti A. . ( 1984;). Teicoplanin, a new antibiotic from Actinoplanes teichomyceticus nov. sp. Antimicrob Agents Chemother 26: 917––923 [CrossRef] [PubMed].
     [Google Scholar]
  • Staneck J. L. , Roberts G. D. . ( 1974;). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28: 226––231 [PubMed].
     [Google Scholar]
  • Tamaoka J. , Komagata K. . ( 1984;). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25: 125––128 [CrossRef].
     [Google Scholar]
  • Tamura K. , Stecher G. , Peterson D. , Filipski A. , Kumar S. . ( 2013;). mega 6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725––2729 [CrossRef] [PubMed].
     [Google Scholar]
  • Taylor H. D. , Knoche L. , Grauville W. C. . ( 1958;). Color Harmony Manual , 4th edn. Chicago: Container Corporation of America;.
     [Google Scholar]
  • Thompson J. D. , Higgins D. G. , Gibson T. J. . ( 1994;). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673––4680 [CrossRef] [PubMed].
     [Google Scholar]
  • Tomiyasu I. . ( 1982;). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides . J Bacteriol 151: 828––837 [PubMed].
     [Google Scholar]
  • Uchida K. , Aida K. . ( 1984;). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30: 131––134.[CrossRef]
    [Google Scholar]
  • Vobis G. , Schäfer J. , Kämpfer P. . ( 2012;). Genus III. Actinoplanes Couch 1950, 89AL emend. Stackebrandt and Kroppenstedt 1987, 112. . In Bergey's Manual of Systematic Bacteriology , 2nd edn.., vol. 5, pp. 1058––1088. Edited by Goodfellow M. , Kämpfer P. , Busse H.-J. , Trujillo M. , Ludwig W. , Suzuki K-i. , Parte A. , Whitman W. . New York: Springer;.
     [Google Scholar]
  • Wayne L. G. , Brenner D. J. , Colwell R. R. , Grimont P. A. D. , Kandler O. , Krichevsky M. I. , Moore L. H. , Moore W. E. C. , Murray R. G. E. , other authors . ( 1987;). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463––464 [CrossRef].
     [Google Scholar]
  • Williams S. T. , Cross T. . ( 1971;). Chapter XI Actinomycetes . Methods Microbiol 4: 295––334 [CrossRef].
     [Google Scholar]
  • Yamamura H. , Ashizawa H. , Nakagawa Y. , Hamada M. , Ishida Y. , Otoguro M. , Tamura T. , Hayakawa M. . ( 2011a;). Actinomycetospora iriomotensis sp. nov., a novel actinomycete isolated from a lichen sample. J Antibiot (Tokyo) 64: 289––292 [CrossRef] [PubMed].
     [Google Scholar]
  • Yamamura H. , Ashizawa H. , Nakagawa Y. , Hamada M. , Ishida Y. , Otoguro M. , Tamura T. , Hayakawa M. . ( 2011b;). Actinomycetospora rishiriensis sp. nov., isolated from a lichen. Int J Syst Evol Microbiol 61: 2621––2625 [CrossRef] [PubMed].
     [Google Scholar]
http://sgm.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.000746
Loading

Supplementary Data

 Data loading....

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.000746
2016-01-01
2019-05-23
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/1/468.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.000746&mimeType=html&fmt=ahah

Author and Article Information

 Figure data loading....

Footnotes:

Validated antibodies in this article

This is a required field
Please enter a valid email address
Please check the format of the address you have entered.
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error