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- Volume 66, Issue 11
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f Maribacter arenosus sp. nov., isolated from marine sediment
- Authors: Chutimon Thongphrom1 , Jong-Hwa Kim1 , Wonyong Kim1
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- VIEW AFFILIATIONS
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1 Department of Microbiology, Chung–Ang University College of Medicine, Seoul, Republic of Korea
- Correspondence Wonyong Kim [email protected]
- First Published Online: 01 November 2016, International Journal of Systematic and Evolutionary Microbiology 66: 4826-4831, doi: 10.1099/ijsem.0.001436
- Subject: New taxa - Bacteroidetes
- Received:
- Accepted:
- Cover date:




Maribacter arenosus sp. nov., isolated from marine sediment, Page 1 of 1
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A Gram-staining-negative, non-spore-forming, non-gliding, aerobic bacterial strain, designated CAU 1321T was isolated from marine sediment in Incheon, South Korea. The strain’s taxonomic position was investigated using a polyphasic approach. CAU 1321T grew optimally at 30 °C and at pH 8 in the presence of 1 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that CAU 1321T represented a member of the genus Maribacter , closely related to Maribacter polysiphoniae KCTC 22021T (similarity 98.0 %). The strain contained MK-6 as the predominant menaquinone and iso-C15 : 0, iso-C17 : 0 3-OH, and iso-C15 : 1 G as the major fatty acids. The polar lipids of CAU 1321T consisted of phosphatidylethanolamine, one unidentified aminoglycolipid, five unidentified aminolipids, two unidentified aminophospholipids, two unidentified glycolipids and three unidentified lipids. The DNA G+C content was 40.6 mol% and the level of DNA–DNA relatedness between CAU 1321T and the most closely related strain, M. polysiphoniae KCTC 22021T was 25.2 %. On the basis of phenotypic and chemotaxonomic properties, and phylogenetic inference, CAU 1321T is considered to represent a novel species of the genus Maribacter , for which the name Maribacter arenosus sp. nov. is proposed. The type strain is CAU 1321T (=KCTC 52191T=NBRC 111990T).
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The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CAU 1321T is KU719511.
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Two supplementary figures are available with the online Supplementary Material.
- Keyword(s): marine sediment, Maribacter arenosus, Bacteroides, Flavobacteriaceae
© 2016 IUMS | Published by the Microbiology Society
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Barbeyron T., Carpentier F., L'haridon S., Schüler M., Michel G., Amann R..( 2008;). Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter. . Int J Syst Evol Microbiol58:790––797. [CrossRef][PubMed]
-
Bernardet J. F., Nakagawa Y., Holmes B..Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes( 2002;). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol52:1049––1070. [CrossRef][PubMed]
-
Cappuccino J. G., Sherman N..( 2002;). Microbiology: A Laboratory Manual, , 6th edn.. Menlo Park, CA:: Benjamin/Cummings;.
-
Cho K. H., Hong S. G., Cho H. H., Lee Y. K., Chun J., Lee H. K..( 2008;). Maribacter arcticus sp. nov., isolated from Arctic marine sediment. . Int J Syst Evol Microbiol58:1300––1303. [CrossRef][PubMed]
-
Ezaki T., Hashimoto Y., Yabuuchi E..( 1989;). Fluorometric deoxyribonucleic acid–deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int Syst Bacteriol39:224––229. [CrossRef]
-
Felsenstein J..( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol17:368––376. [CrossRef]
-
Felsenstein J..( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution39:783––791. [CrossRef]
-
Felsenstein J..( 1989;). phylip – phylogeny inference package (version 3.2). . Cladistics5:164––166.
-
Fitch W. M..( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool20:406––416. [CrossRef]
-
Fitch W. M., Margoliash E..( 1967;). Construction of phylogenetic trees. . Science155:279––284. [CrossRef][PubMed]
-
Gordon R. E., Mihm J. M..( 1962;). Identification of Nocardia caviae (Erikson) nov. comb. . Ann N Y Acad Sci98:628––636.[CrossRef]
-
Goris J., Suzuki K.-I., De Vos P., Nakase T., Kersters K..( 1998;). Evaluation of a microplate DNA–DNA hybridization method compared with the initial renaturation method. . Can J Microbiol44:1148––1153. [CrossRef]
-
Hu J., Yang Q.-Q., Ren Y., Zhang W.-W., Zheng G., Sun C., Pan J., Zhu X. F., Zhang X.-Q., Wu M..( 2015;). Maribacter thermophilus sp. nov., isolated from an algal bloom in an intertidal zone, and emended description of the genus Maribacter. . Int J Syst Evol Microbiol65:36––41. [CrossRef][PubMed]
-
Jackson S. A., Kennedy J., Morrissey J. P., O'Gara F., Dobson A. D..( 2015;). Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter. . Int J Syst Evol Microbiol65:2097––2103. [CrossRef][PubMed]
-
Jukes T. H., Cantor C. R..( 1969;). Evolution of protein molecules. . In Mammalian Protein Metabolism, pp 21––132. Edited by Munro H. H.. New York:: Academic Press;.[CrossRef]
-
Jung Y. T., Lee J. S., Yoon J. H..( 2014;). Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea. . Antonie van Leeuwenheok106:733––742.[CrossRef]
-
Kim K. H., Jin H. M., Jeong H., Jeon C. O..( 2016;). Maribacter lutimaris sp. nov., isolated from marine sediment. . Int J Syst Evol Microbiol66:1773––1778. [CrossRef][PubMed]
-
Komagata K., Suzuki K..( 1987;). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol19:161––208.[CrossRef]
-
Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. et al.( 2007;). clustal w and clustal x version 2.0. . Bioinformatics23:2947––2948. [CrossRef][PubMed]
-
Lo N., Jin H. M., Jeon C. O..( 2013;). Maribacter aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Maribacter. . Int J Syst Evol Microbiol63:3409––3414. [CrossRef][PubMed]
-
Marmur J..( 1961;). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol3:208––218. [CrossRef]
-
Minnikin D. E., Hutchinson I. G., Caldicott A. B., Goodfellow M..( 1980;). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. . J Chromatogr188:221––233. [CrossRef]
-
Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H..( 1984;). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Meth2:233––241. [CrossRef]
-
Nam S. W., Kim W., Chun J., Goodfellow M..( 2004;). Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam. . Int J Syst Evol Microbiol54:1209––1212. [CrossRef][PubMed]
-
Nedashkovskaya O. I., Kim S. B., Han S. K., Lysenko A. M., Rohde M., Rhee M. S., Frolova G. M., Falsen E., Mikhailov V. V., Bae K. S..( 2004;). Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. . Int J Syst Evol Microbiol54:1017––1023. [CrossRef][PubMed]
-
Nedashkovskaya O. I., Vancanneyt M., De Vos P., Kim S. B., Lee M. S., Mikhailov V. V..( 2007;). Maribacter polysiphoniae sp. nov., isolated from a red alga. . Int J Syst Evol Microbiol57:2840––2843. [CrossRef][PubMed]
-
Nedashkovskaya O. I., Kim S. B., Mikhailov V. V..( 2010;). Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae. . Int J Syst Evol Microbiol60:214––218. [CrossRef][PubMed]
-
Park S., Jung Y. T., Park J. M., Won S. M., Yoon J. H..( 2015;). Maribacter confluentis sp. nov., isolated from the junction between the ocean and a freshwater spring. . Int J Syst Evol Microbiol65:3079––3085. [CrossRef][PubMed]
-
Saitou N., Nei M..( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol4:406––425.[PubMed]
-
Smibert R. M., Krieg N. R..( 1994;). Phenotypic characterization. . In Methods for General and Molecular Bacteriology , pp. 607––654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R.. Washington, DC:: American Society for Microbiology;.
-
Tamaoka J., Komagata K..( 1984;). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. . FEMS Microbiol Lett25:125––128. [CrossRef]
-
Tang M., Wang G., Xiang W., Chen C., Wu J., Dai S., Wu H., Li T., Wu H..( 2015;). Maribacter flavus sp. nov., isolated from a cyanobacterial culture pond. . Int J Syst Evol Microbiol65:3997––4002. [CrossRef]
-
Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al.( 1987;). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Evol Microbiol37:463––464.[CrossRef]
-
Weerawongwiwat V., Kang H., Jung M. Y., Kim W..( 2013;). Maribacter chungangensis sp. nov., isolated from a green seaweed, and emended descriptions of the genus Maribacter and Maribacter arcticus. . Int J Syst Evol Microbiol63:2553––2558. [CrossRef][PubMed]
-
Yoon J.-H., Kang S.-J., Lee S.-Y., Lee C.-H., Oh T.-K..( 2005;). Maribacter dokdonensis sp. nov., isolated from sea water off a Korean island, Dokdo. . Int J Syst Evol Microbiol55:2051––2055. [CrossRef][PubMed]
-
Zhang G. I., Hwang C. Y., Kang S. H., Cho B. C..( 2009;). Maribacter antarcticus sp. nov., a psychrophilic bacterium isolated from a culture of the Antarctic green alga Pyramimonas gelidicola. . Int J Syst Evol Microbiol59:1455––1459. [CrossRef][PubMed]

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