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- Volume 67, Issue 9
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f Swionibacillus sediminis gen. nov., sp. nov., a member of the family Bacillaceae isolated from ocean sediment
- Authors: Jingjing Li1 , Junfeng Liu1 , Yulong Shen1 , Jinfeng Ni1
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1 State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China
- *Correspondence: Jinfeng Ni, [email protected]
- First Published Online: 31 August 2017, International Journal of Systematic and Evolutionary Microbiology 67: 3440-3445, doi: 10.1099/ijsem.0.002133
- Subject: New taxa
- Received:
- Accepted:
- Cover date:




Swionibacillus sediminis gen. nov., sp. nov., a member of the family Bacillaceae isolated from ocean sediment, Page 1 of 1
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A Gram-stain-negative, non-motile, strictly aerobic bacterium designated BW11-2T was isolated from marine sediment of the south-west Indian Ocean. Cells of BW11-2T were rod-shaped, endospore-forming, 0.3–0.5 µm wide, 1.8–2.0 µm long, catalase-positive and oxidase-negative. The isolate was capable of growing at 15–45 °C (optimum 30 °C), pH 5–9 (optimum 7) and with 0.5–10 % (w/v) NaCl (optimum 3 %). Based on 16S rRNA gene sequence similarities, BW11-2T was shown to belong to the family Bacillaceae within the phylum Firmicutes and formed a distinct lineage, showing the highest sequence similarities to closely related genera: Bacillus (93.9–94.7 %), Graci libacillus (93.3–93.7 %), Amphibacillus (93.5 %), Virgibacillu s (92.9–93.1 %) and Anaerobacillus (92.6–93.0 %). BW11-2T shared the highest 16S rRNA gene sequence similarity with the species Bacillus oleronius (94.7 %). The predominant fatty acids (>10 %) were anteiso-C15 : 0 and iso-C15 : 0. The major quinone was menaquinone-7 (MK-7). Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and one unidentified aminolipid. The genomic DNA G+C content of strain BW11-2T was 43.3 mol%. On the basis of the morphological and chemotaxonomic characteristics as well as genotypic data, strain BW11-2T represents a novel genus and species in the family Bacillaceae , for which the name Swionibacillus sediminis gen. nov., sp. nov. is proposed. Strain BW11-2T (=CICC 24196T=JCM 31924T) is the type strain.
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The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain BW11-2T is KY635836.
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Three supplementary figures are available with the online Supplementary Material.
- Keyword(s): Swionibacillus sediminis, deep-sea bacteria, Gram-negative, Southwest Indian Ocean, sediment
© 2017 IUMS | Published by the Microbiology Society
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1. Ludwig W, Schleifer KH, Whitman WB. Taxonomic outline of the phylum Firmicutes. In Garrity GM, Boone DR, Castenholz RW. (editors) Bergey's Manual of Systematic Bacteriology, 3rd ed.vol. 3 New York: Springer; 2009; pp.9–13
-
2. Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P. Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 2000;64:548–572 [CrossRef][PubMed]
-
3. Yumoto I, Yamazaki K, Sawabe T, Nakano K, Kawasaki K et al. Bacillus horti sp. nov., a new gram-negative alkaliphilic Bacillus. Int J Syst Bacteriol 1998;48:565–571 [CrossRef][PubMed]
-
4. Kuhnigk T, Borst EM, Breunig A, König H, Collins MD et al. Bacillus oleronius sp.nov., a member of the hindgut flora of the termite reticulitermes santonensis (Feytaud). Can J Microbiol 1995;41:699–706 [CrossRef][PubMed]
-
5. Heyndrickx M, Coorevits A, Scheldeman P, Lebbe L, Schumann P et al. Emended descriptions of Bacillus sporothermodurans and Bacillus oleronius with the inclusion of dairy farm isolates of both species. Int J Syst Evol Microbiol 2012;62:307–314 [CrossRef][PubMed]
-
6. Yh W, Cao Y, Wang CS, Wu M, Aharon O et al. Microbial community structure and nitrogenase gene diversity of sediment from a deep-sea hydrothermal vent field on the Southwest Indian Ridge. Acta Oceanol Sin 2014;33:94–104
-
7. Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991;173:697–703 [CrossRef][PubMed]
-
8. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716–721 [CrossRef][PubMed]
-
9. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997;25:4876–4882 [CrossRef][PubMed]
-
10. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731–2739 [CrossRef][PubMed]
-
11. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406–425[PubMed]
-
12. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981;17:368–376 [CrossRef][PubMed]
-
13. Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W et al. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 2014;12:635–645 [CrossRef][PubMed]
-
14. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994; pp.607–654
-
15. Logan NA, Berge O, Bishop AH, Busse HJ, de Vos P et al. Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 2009;59:2114–2121 [CrossRef][PubMed]
-
16. Bernardet JF, Nakagawa Y, Holmes B.Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002;52:1049–1070 [CrossRef][PubMed]
-
17. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 1990
-
18. Tindall BJ. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 1990;66:199–202 [CrossRef]
-
19. Xie CH, Yokota A. Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 2003;49:345–349 [CrossRef][PubMed]
-
20. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989;39:159–167 [CrossRef]
-
21. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974;28:226–231[PubMed]
-
22. Albuquerque L, Tiago I, Taborda M, Nobre MF, Veríssimo A et al. Bacillus isabeliae sp. nov., a halophilic bacterium isolated from a sea salt evaporation pond. Int J Syst Evol Microbiol 2008;58:226–230 [CrossRef][PubMed]
-
23. Seiler H, Schmidt V, Wenning M, Scherer S. Bacillus kochii sp. nov., isolated from foods and a pharmaceuticals manufacturing site. Int J Syst Evol Microbiol 2012;62:1092–1097 [CrossRef][PubMed]
-
24. Kosowski K, Schmidt M, Pukall R, Hause G, Kämpfer P et al. Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor. Int J Syst Evol Microbiol 2014;64:88–94 [CrossRef][PubMed]
-
25. An SY, Ishikawa S, Kasai H, Goto K, Yokota A. Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan. Int J Syst Evol Microbiol 2007;57:2489–2492 [CrossRef][PubMed]
-
26. Hirota K, Hanaoka Y, Nodasaka Y, Yumoto I. Gracilibacillus alcaliphilus sp. nov., a facultative alkaliphile isolated from indigo fermentation liquor for dyeing. Int J Syst Evol Microbiol 2014;64:3174–3180 [CrossRef][PubMed]
-
27. Chen YG, Cui XL, Wang YX, Zhang YQ, Tang SK et al. Virgibacillus sediminis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 2009;59:2058–2063 [CrossRef][PubMed]
-
28. Zavarzina DG, Tourova TP, Kolganova TV, Boulygina ES, Zhilina TN. Description of Anaerobacillus alkalilacustre gen. nov., sp. nov.—Strictly anaerobic diazotrophic Bacillus isolated from soda lake and transfer of Bacillus arseniciselenatis, Bacillus macyae, and Bacillus alkalidiazotrophicus to Anaerobacillus as the new combinations A. arseniciselenatis comb. nov., A. macyae comb. nov., and A. alkalidiazotrophicus comb. nov. Microbiology 2009;78:723–731 [CrossRef]

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