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Volume 69, Issue 11

sp. nov., an actinomycete associated with arbuscular mycorrhizal fungal spores Free

Abstract

A novel actinomycete, designated strain GLM-1, was isolated from arbuscular mycorrhizal fungal spores from RYA08, collected from Pierre ex Lec. rhizosphere soil in Klaeng, Rayong Province, Thailand. Morphological characteristics of this strain included long chains of rod-like cells and squarish elements. The cell-wall composition of this novel isolate contained -diaminopimelic acid. The whole-cell diagnostic sugars were arabinose and galactose. The predominant menaquinone was MK-9(H). The major fatty acids were iso-C and iso-C. Only phosphatidylethanolamine was detected as a polar lipid. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain GLM-1 was closely related to SB026 (99.11 %) with a low DNA–DNA hybridization value of 22.6–34.7 %. Genome sequencing revealed a genome size of 10 Mbp. There were obvious distinctions in the average nucleotide identity values between stain GLM-1 and its closely related strains at around 86–93 % (ANIb) and 89–94 % (ANIm). The digital DNA–DNA hybridization values between strain GLM-1 and type strains of phylogenetically related species were 34–55 %. The G+C content of the genomic DNA was 71.8 mol%. Based on these data, strain GLM-1 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is GLM-1 (=TBRC 9315=NBRC 113658)

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Keyword(s): Amycolatopsis eburnea and Arbuscular mycorrhiza fungi
© 2019 The Authors
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2019-11-01
2024-05-09
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Amycolatopsis eburnea sp. nov., an actinomycete associated with arbuscular mycorrhizal fungal spores
Int J Syst Evol Microbiol 69, 3603 (2019); https://doi.org/10.1099/ijsem.0.003669
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